Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03960

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03955 and RR42_RS03960 are separated by 49 nucleotidesRR42_RS03960 and RR42_RS03965 are separated by 186 nucleotides RR42_RS03955: RR42_RS03955 - amidinotransferase, at 872,611 to 873,510 _RS03955 RR42_RS03960: RR42_RS03960 - ornithine cyclodeaminase, at 873,560 to 874,636 _RS03960 RR42_RS03965: RR42_RS03965 - DNA-binding protein, at 874,823 to 875,425 _RS03965 Position (kb) 873 874 875Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 872.653 kb on + strandat 872.653 kb on + strandat 872.654 kb on - strandat 872.654 kb on - strandat 873.139 kb on + strand, within RR42_RS03955at 873.139 kb on + strand, within RR42_RS03955at 873.139 kb on + strand, within RR42_RS03955at 873.140 kb on - strand, within RR42_RS03955at 873.140 kb on - strand, within RR42_RS03955at 873.187 kb on + strand, within RR42_RS03955at 873.188 kb on - strand, within RR42_RS03955at 873.188 kb on - strand, within RR42_RS03955at 873.190 kb on + strand, within RR42_RS03955at 873.396 kb on - strand, within RR42_RS03955at 873.403 kb on + strand, within RR42_RS03955at 873.403 kb on + strand, within RR42_RS03955at 873.403 kb on + strand, within RR42_RS03955at 873.403 kb on + strand, within RR42_RS03955at 873.404 kb on - strand, within RR42_RS03955at 873.404 kb on - strand, within RR42_RS03955at 873.771 kb on - strand, within RR42_RS03960at 873.771 kb on - strand, within RR42_RS03960at 873.782 kb on + strand, within RR42_RS03960at 873.782 kb on + strand, within RR42_RS03960at 873.782 kb on + strand, within RR42_RS03960at 873.782 kb on + strand, within RR42_RS03960at 873.783 kb on - strand, within RR42_RS03960at 874.053 kb on - strand, within RR42_RS03960at 874.237 kb on + strand, within RR42_RS03960at 874.237 kb on + strand, within RR42_RS03960at 874.238 kb on - strand, within RR42_RS03960at 874.571 kb on + strandat 874.571 kb on + strandat 874.571 kb on + strandat 874.706 kb on - strandat 874.773 kb on + strandat 874.773 kb on + strandat 874.774 kb on - strandat 874.774 kb on - strandat 874.774 kb on - strandat 874.948 kb on - strand, within RR42_RS03965at 874.948 kb on - strand, within RR42_RS03965at 875.052 kb on + strand, within RR42_RS03965at 875.052 kb on + strand, within RR42_RS03965at 875.053 kb on - strand, within RR42_RS03965at 875.055 kb on + strand, within RR42_RS03965at 875.056 kb on - strand, within RR42_RS03965at 875.056 kb on - strand, within RR42_RS03965at 875.089 kb on + strand, within RR42_RS03965at 875.089 kb on + strand, within RR42_RS03965at 875.090 kb on - strand, within RR42_RS03965at 875.090 kb on - strand, within RR42_RS03965at 875.090 kb on - strand, within RR42_RS03965at 875.090 kb on - strand, within RR42_RS03965at 875.099 kb on - strand, within RR42_RS03965at 875.272 kb on + strand, within RR42_RS03965at 875.272 kb on + strand, within RR42_RS03965at 875.272 kb on + strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.276 kb on + strand, within RR42_RS03965at 875.276 kb on + strand, within RR42_RS03965at 875.276 kb on + strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.339 kb on + strand, within RR42_RS03965at 875.340 kb on - strand, within RR42_RS03965at 875.388 kb on + strandat 875.388 kb on + strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.392 kb on - strandat 875.442 kb on + strandat 875.443 kb on - strandat 875.521 kb on + strandat 875.521 kb on + strandat 875.559 kb on - strandat 875.559 kb on - strandat 875.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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872,653 + -0.3
872,653 + -2.0
872,654 - +0.3
872,654 - +0.8
873,139 + RR42_RS03955 0.59 +0.1
873,139 + RR42_RS03955 0.59 -0.2
873,139 + RR42_RS03955 0.59 -1.2
873,140 - RR42_RS03955 0.59 -3.9
873,140 - RR42_RS03955 0.59 -0.2
873,187 + RR42_RS03955 0.64 +2.7
873,188 - RR42_RS03955 0.64 +1.0
873,188 - RR42_RS03955 0.64 +0.2
873,190 + RR42_RS03955 0.64 +0.2
873,396 - RR42_RS03955 0.87 +0.3
873,403 + RR42_RS03955 0.88 -0.2
873,403 + RR42_RS03955 0.88 -2.4
873,403 + RR42_RS03955 0.88 +0.3
873,403 + RR42_RS03955 0.88 -0.2
873,404 - RR42_RS03955 0.88 -1.2
873,404 - RR42_RS03955 0.88 +1.3
873,771 - RR42_RS03960 0.20 -1.1
873,771 - RR42_RS03960 0.20 -1.2
873,782 + RR42_RS03960 0.21 +0.0
873,782 + RR42_RS03960 0.21 -0.6
873,782 + RR42_RS03960 0.21 +0.5
873,782 + RR42_RS03960 0.21 -1.0
873,783 - RR42_RS03960 0.21 +1.2
874,053 - RR42_RS03960 0.46 -0.3
874,237 + RR42_RS03960 0.63 -0.1
874,237 + RR42_RS03960 0.63 +0.8
874,238 - RR42_RS03960 0.63 -2.5
874,571 + +0.2
874,571 + +0.5
874,571 + +0.6
874,706 - -1.2
874,773 + -1.0
874,773 + +1.2
874,774 - +0.2
874,774 - +0.6
874,774 - -1.5
874,948 - RR42_RS03965 0.21 -0.5
874,948 - RR42_RS03965 0.21 -0.1
875,052 + RR42_RS03965 0.38 +0.3
875,052 + RR42_RS03965 0.38 +0.6
875,053 - RR42_RS03965 0.38 -1.2
875,055 + RR42_RS03965 0.38 +0.9
875,056 - RR42_RS03965 0.39 -1.3
875,056 - RR42_RS03965 0.39 -0.0
875,089 + RR42_RS03965 0.44 +0.5
875,089 + RR42_RS03965 0.44 -0.6
875,090 - RR42_RS03965 0.44 -0.7
875,090 - RR42_RS03965 0.44 -1.2
875,090 - RR42_RS03965 0.44 +1.9
875,090 - RR42_RS03965 0.44 +0.7
875,099 - RR42_RS03965 0.46 +0.4
875,272 + RR42_RS03965 0.74 -0.5
875,272 + RR42_RS03965 0.74 -0.1
875,272 + RR42_RS03965 0.74 -0.8
875,273 - RR42_RS03965 0.75 +1.1
875,273 - RR42_RS03965 0.75 -0.4
875,273 - RR42_RS03965 0.75 -0.2
875,273 - RR42_RS03965 0.75 +1.8
875,273 - RR42_RS03965 0.75 -1.2
875,276 + RR42_RS03965 0.75 +1.3
875,276 + RR42_RS03965 0.75 -0.1
875,276 + RR42_RS03965 0.75 -1.4
875,277 - RR42_RS03965 0.75 +0.4
875,277 - RR42_RS03965 0.75 -0.4
875,277 - RR42_RS03965 0.75 +0.3
875,277 - RR42_RS03965 0.75 +0.0
875,277 - RR42_RS03965 0.75 +0.1
875,277 - RR42_RS03965 0.75 -2.0
875,277 - RR42_RS03965 0.75 +0.7
875,277 - RR42_RS03965 0.75 -1.2
875,339 + RR42_RS03965 0.86 +0.6
875,340 - RR42_RS03965 0.86 -1.2
875,388 + +0.7
875,388 + +0.5
875,389 - -0.9
875,389 - +0.9
875,389 - +0.2
875,389 - +0.2
875,389 - +0.2
875,392 - -0.7
875,442 + -0.3
875,443 - -0.9
875,521 + -1.7
875,521 + +0.6
875,559 - -2.8
875,559 - -0.8
875,559 - -2.8

Or see this region's nucleotide sequence