Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03930

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03925 and RR42_RS03930 are separated by 119 nucleotidesRR42_RS03930 and RR42_RS03935 are separated by 141 nucleotides RR42_RS03925: RR42_RS03925 - hypothetical protein, at 865,066 to 866,229 _RS03925 RR42_RS03930: RR42_RS03930 - (2Fe-2S)-binding protein, at 866,349 to 867,365 _RS03930 RR42_RS03935: RR42_RS03935 - purine permease, at 867,507 to 868,805 _RS03935 Position (kb) 866 867 868Strain fitness (log2 ratio) -2 -1 0 1at 865.676 kb on + strand, within RR42_RS03925at 865.939 kb on + strand, within RR42_RS03925at 866.154 kb on + strandat 866.330 kb on + strandat 866.539 kb on - strand, within RR42_RS03930at 866.587 kb on - strand, within RR42_RS03930at 866.778 kb on + strand, within RR42_RS03930at 866.778 kb on + strand, within RR42_RS03930at 867.237 kb on + strand, within RR42_RS03930at 867.363 kb on + strandat 867.363 kb on + strandat 867.364 kb on - strandat 867.590 kb on - strandat 867.590 kb on - strandat 867.590 kb on - strandat 867.594 kb on + strandat 867.594 kb on + strandat 867.594 kb on + strandat 867.594 kb on + strandat 867.594 kb on + strandat 867.595 kb on - strandat 867.595 kb on - strandat 868.203 kb on + strand, within RR42_RS03935at 868.203 kb on + strand, within RR42_RS03935

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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865,676 + RR42_RS03925 0.52 -0.2
865,939 + RR42_RS03925 0.75 -0.4
866,154 + +0.7
866,330 + +1.4
866,539 - RR42_RS03930 0.19 +0.8
866,587 - RR42_RS03930 0.23 -2.6
866,778 + RR42_RS03930 0.42 -2.2
866,778 + RR42_RS03930 0.42 +0.7
867,237 + RR42_RS03930 0.87 -0.3
867,363 + +0.7
867,363 + +0.8
867,364 - -2.4
867,590 - +0.4
867,590 - -1.9
867,590 - -0.5
867,594 + -0.7
867,594 + -0.4
867,594 + +0.1
867,594 + -0.5
867,594 + -0.3
867,595 - -0.8
867,595 - -0.1
868,203 + RR42_RS03935 0.54 -1.2
868,203 + RR42_RS03935 0.54 -1.2

Or see this region's nucleotide sequence