Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03425 and RR42_RS03430 are separated by 104 nucleotides RR42_RS03430 and RR42_RS03435 are separated by 194 nucleotides
RR42_RS03425: RR42_RS03425 - LysR family transcriptional regulator, at 762,026 to 762,934
_RS03425
RR42_RS03430: RR42_RS03430 - SAM-dependent methyltransferase, at 763,039 to 763,797
_RS03430
RR42_RS03435: RR42_RS03435 - XRE family transcriptional regulator, at 763,992 to 764,801
_RS03435
Position (kb) 763
764 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 762.296 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.465 kb on + strand, within RR42_RS03425 at 762.465 kb on + strand, within RR42_RS03425 at 762.466 kb on - strand, within RR42_RS03425 at 762.597 kb on + strand, within RR42_RS03425 at 762.597 kb on + strand, within RR42_RS03425 at 762.598 kb on - strand, within RR42_RS03425 at 762.891 kb on + strand at 762.891 kb on + strand at 762.891 kb on + strand at 762.892 kb on - strand at 762.952 kb on + strand at 762.968 kb on + strand at 762.976 kb on + strand at 763.017 kb on - strand at 763.024 kb on + strand at 763.040 kb on + strand at 763.103 kb on + strand at 763.114 kb on + strand at 763.114 kb on + strand at 763.283 kb on + strand, within RR42_RS03430 at 763.293 kb on + strand, within RR42_RS03430 at 763.406 kb on + strand, within RR42_RS03430 at 763.592 kb on + strand, within RR42_RS03430 at 763.593 kb on - strand, within RR42_RS03430 at 763.593 kb on - strand, within RR42_RS03430 at 763.745 kb on + strand at 763.893 kb on - strand at 763.897 kb on + strand at 763.897 kb on + strand at 763.897 kb on + strand at 763.897 kb on + strand at 763.898 kb on - strand at 763.898 kb on - strand at 763.898 kb on - strand at 763.941 kb on + strand at 763.941 kb on + strand at 763.941 kb on + strand at 764.001 kb on + strand at 764.001 kb on + strand at 764.283 kb on + strand, within RR42_RS03435 at 764.284 kb on - strand, within RR42_RS03435 at 764.315 kb on + strand, within RR42_RS03435 at 764.315 kb on + strand, within RR42_RS03435 at 764.315 kb on + strand, within RR42_RS03435 at 764.315 kb on + strand, within RR42_RS03435 at 764.316 kb on - strand, within RR42_RS03435 at 764.385 kb on + strand, within RR42_RS03435 at 764.385 kb on + strand, within RR42_RS03435 at 764.386 kb on - strand, within RR42_RS03435 at 764.386 kb on - strand, within RR42_RS03435 at 764.413 kb on + strand, within RR42_RS03435 at 764.414 kb on - strand, within RR42_RS03435 at 764.501 kb on - strand, within RR42_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 762,296 + RR42_RS03425 0.30 +1.8 762,356 + RR42_RS03425 0.36 -0.6 762,356 + RR42_RS03425 0.36 +0.8 762,356 + RR42_RS03425 0.36 +0.4 762,356 + RR42_RS03425 0.36 +0.3 762,356 + RR42_RS03425 0.36 -0.1 762,356 + RR42_RS03425 0.36 -1.2 762,357 - RR42_RS03425 0.36 -0.7 762,357 - RR42_RS03425 0.36 +1.2 762,357 - RR42_RS03425 0.36 -1.2 762,357 - RR42_RS03425 0.36 +0.6 762,357 - RR42_RS03425 0.36 -0.1 762,357 - RR42_RS03425 0.36 -3.9 762,357 - RR42_RS03425 0.36 -0.2 762,357 - RR42_RS03425 0.36 +0.8 762,357 - RR42_RS03425 0.36 -1.0 762,465 + RR42_RS03425 0.48 -2.1 762,465 + RR42_RS03425 0.48 -1.7 762,466 - RR42_RS03425 0.48 -1.3 762,597 + RR42_RS03425 0.63 -0.7 762,597 + RR42_RS03425 0.63 +0.2 762,598 - RR42_RS03425 0.63 -0.5 762,891 + -1.2 762,891 + +0.6 762,891 + -0.6 762,892 - -0.1 762,952 + +1.2 762,968 + +0.7 762,976 + -0.9 763,017 - +0.6 763,024 + -0.6 763,040 + -0.5 763,103 + -0.2 763,114 + +0.6 763,114 + -0.4 763,283 + RR42_RS03430 0.32 -0.6 763,293 + RR42_RS03430 0.33 +0.4 763,406 + RR42_RS03430 0.48 +1.5 763,592 + RR42_RS03430 0.73 +1.9 763,593 - RR42_RS03430 0.73 -0.7 763,593 - RR42_RS03430 0.73 +1.8 763,745 + +0.1 763,893 - +0.7 763,897 + -0.1 763,897 + -0.9 763,897 + +2.8 763,897 + +0.5 763,898 - +1.0 763,898 - +3.0 763,898 - +0.2 763,941 + +0.5 763,941 + +1.9 763,941 + +0.2 764,001 + -1.2 764,001 + +0.8 764,283 + RR42_RS03435 0.36 +1.2 764,284 - RR42_RS03435 0.36 +1.2 764,315 + RR42_RS03435 0.40 +0.9 764,315 + RR42_RS03435 0.40 -0.0 764,315 + RR42_RS03435 0.40 -2.2 764,315 + RR42_RS03435 0.40 -1.0 764,316 - RR42_RS03435 0.40 +0.3 764,385 + RR42_RS03435 0.49 +0.4 764,385 + RR42_RS03435 0.49 -1.0 764,386 - RR42_RS03435 0.49 +1.0 764,386 - RR42_RS03435 0.49 +0.2 764,413 + RR42_RS03435 0.52 -0.8 764,414 - RR42_RS03435 0.52 +0.0 764,501 - RR42_RS03435 0.63 +0.5
Or see this region's nucleotide sequence