Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03390 and RR42_RS03395 are separated by 137 nucleotides RR42_RS03395 and RR42_RS03400 are separated by 179 nucleotides
RR42_RS03390: RR42_RS03390 - ABC transporter substrate-binding protein, at 754,848 to 755,816
_RS03390
RR42_RS03395: RR42_RS03395 - membrane protein, at 755,954 to 756,523
_RS03395
RR42_RS03400: RR42_RS03400 - permease, at 756,703 to 757,596
_RS03400
Position (kb) 755
756
757 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 755.189 kb on - strand, within RR42_RS03390 at 755.359 kb on + strand, within RR42_RS03390 at 755.365 kb on + strand, within RR42_RS03390 at 755.366 kb on - strand, within RR42_RS03390 at 755.407 kb on + strand, within RR42_RS03390 at 755.407 kb on + strand, within RR42_RS03390 at 755.408 kb on - strand, within RR42_RS03390 at 755.408 kb on - strand, within RR42_RS03390 at 755.497 kb on + strand, within RR42_RS03390 at 755.563 kb on + strand, within RR42_RS03390 at 755.865 kb on + strand at 755.865 kb on + strand at 756.244 kb on + strand, within RR42_RS03395 at 756.245 kb on - strand, within RR42_RS03395 at 756.245 kb on - strand, within RR42_RS03395 at 756.360 kb on + strand, within RR42_RS03395 at 756.360 kb on + strand, within RR42_RS03395 at 756.580 kb on + strand at 756.581 kb on - strand at 756.581 kb on - strand at 756.611 kb on + strand at 756.612 kb on - strand at 756.612 kb on - strand at 756.653 kb on - strand at 756.688 kb on - strand at 756.688 kb on - strand at 756.688 kb on - strand at 756.691 kb on + strand at 756.818 kb on - strand, within RR42_RS03400 at 756.940 kb on + strand, within RR42_RS03400 at 756.941 kb on - strand, within RR42_RS03400 at 757.018 kb on + strand, within RR42_RS03400 at 757.018 kb on + strand, within RR42_RS03400 at 757.019 kb on - strand, within RR42_RS03400 at 757.019 kb on - strand, within RR42_RS03400 at 757.019 kb on - strand, within RR42_RS03400 at 757.483 kb on + strand, within RR42_RS03400 at 757.483 kb on + strand, within RR42_RS03400 at 757.484 kb on - strand, within RR42_RS03400 at 757.484 kb on - strand, within RR42_RS03400 at 757.484 kb on - strand, within RR42_RS03400 at 757.484 kb on - strand, within RR42_RS03400 at 757.485 kb on + strand, within RR42_RS03400 at 757.486 kb on - strand, within RR42_RS03400 at 757.486 kb on - strand, within RR42_RS03400
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 755,189 - RR42_RS03390 0.35 -0.1 755,359 + RR42_RS03390 0.53 -0.6 755,365 + RR42_RS03390 0.53 -2.3 755,366 - RR42_RS03390 0.53 -1.4 755,407 + RR42_RS03390 0.58 -1.0 755,407 + RR42_RS03390 0.58 -3.3 755,408 - RR42_RS03390 0.58 +0.0 755,408 - RR42_RS03390 0.58 +1.0 755,497 + RR42_RS03390 0.67 +1.0 755,563 + RR42_RS03390 0.74 -0.5 755,865 + +0.4 755,865 + +1.1 756,244 + RR42_RS03395 0.51 -2.8 756,245 - RR42_RS03395 0.51 -0.7 756,245 - RR42_RS03395 0.51 -2.7 756,360 + RR42_RS03395 0.71 +0.7 756,360 + RR42_RS03395 0.71 -0.8 756,580 + -0.3 756,581 - -0.3 756,581 - -0.8 756,611 + +0.7 756,612 - +0.6 756,612 - -0.4 756,653 - -1.1 756,688 - +1.0 756,688 - +0.8 756,688 - +0.8 756,691 + +0.7 756,818 - RR42_RS03400 0.13 -0.0 756,940 + RR42_RS03400 0.27 -1.2 756,941 - RR42_RS03400 0.27 -3.6 757,018 + RR42_RS03400 0.35 -2.0 757,018 + RR42_RS03400 0.35 -1.2 757,019 - RR42_RS03400 0.35 -1.7 757,019 - RR42_RS03400 0.35 -1.0 757,019 - RR42_RS03400 0.35 +0.3 757,483 + RR42_RS03400 0.87 +0.7 757,483 + RR42_RS03400 0.87 +1.4 757,484 - RR42_RS03400 0.87 +1.1 757,484 - RR42_RS03400 0.87 +1.1 757,484 - RR42_RS03400 0.87 -0.6 757,484 - RR42_RS03400 0.87 +0.2 757,485 + RR42_RS03400 0.87 +0.4 757,486 - RR42_RS03400 0.88 +0.1 757,486 - RR42_RS03400 0.88 +0.2
Or see this region's nucleotide sequence