Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03140 and RR42_RS03145 are separated by 94 nucleotides
RR42_RS03140: RR42_RS03140 - molybdenum cofactor biosynthesis protein MoaC, at 694,065 to 694,547
_RS03140
RR42_RS03145: RR42_RS03145 - peptidase M48, at 694,642 to 696,450
_RS03145
Position (kb) 694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 693.084 kb on - strand at 693.101 kb on - strand at 693.135 kb on + strand at 693.204 kb on - strand at 693.204 kb on - strand at 693.204 kb on - strand at 693.286 kb on + strand at 693.286 kb on + strand at 693.286 kb on + strand at 693.287 kb on - strand at 693.287 kb on - strand at 693.287 kb on - strand at 693.289 kb on - strand at 693.366 kb on - strand at 693.378 kb on + strand at 693.390 kb on - strand at 693.397 kb on + strand at 693.397 kb on + strand at 693.412 kb on + strand at 693.412 kb on + strand at 693.413 kb on - strand at 693.465 kb on + strand at 693.466 kb on - strand at 693.466 kb on - strand at 693.529 kb on + strand at 693.529 kb on + strand at 693.529 kb on + strand at 693.530 kb on - strand at 693.530 kb on - strand at 693.530 kb on - strand at 693.530 kb on - strand at 693.531 kb on + strand at 693.531 kb on + strand at 693.531 kb on + strand at 693.531 kb on + strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.543 kb on + strand at 693.544 kb on - strand at 693.549 kb on + strand at 693.549 kb on + strand at 693.549 kb on + strand at 693.549 kb on + strand at 693.550 kb on - strand at 693.615 kb on - strand at 693.661 kb on - strand at 693.684 kb on + strand at 693.685 kb on - strand at 693.723 kb on - strand at 693.799 kb on + strand at 693.799 kb on + strand at 693.800 kb on - strand at 693.800 kb on - strand at 693.800 kb on - strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.933 kb on + strand at 693.934 kb on - strand at 693.934 kb on - strand at 693.934 kb on - strand at 693.934 kb on - strand at 693.934 kb on - strand at 693.936 kb on + strand at 693.937 kb on - strand at 693.965 kb on + strand at 694.028 kb on - strand at 694.066 kb on + strand at 694.066 kb on + strand at 694.067 kb on - strand at 694.168 kb on + strand, within RR42_RS03140 at 694.168 kb on + strand, within RR42_RS03140 at 694.169 kb on - strand, within RR42_RS03140 at 694.169 kb on - strand, within RR42_RS03140 at 694.169 kb on - strand, within RR42_RS03140 at 694.285 kb on + strand, within RR42_RS03140 at 694.324 kb on - strand, within RR42_RS03140 at 694.383 kb on + strand, within RR42_RS03140 at 694.383 kb on + strand, within RR42_RS03140 at 694.383 kb on + strand, within RR42_RS03140 at 694.505 kb on + strand at 694.505 kb on + strand at 694.505 kb on + strand at 694.506 kb on - strand at 694.667 kb on - strand at 694.667 kb on - strand at 694.667 kb on - strand at 694.671 kb on + strand at 694.671 kb on + strand at 694.671 kb on + strand at 694.671 kb on + strand at 694.672 kb on - strand at 694.672 kb on - strand at 694.672 kb on - strand at 694.855 kb on - strand, within RR42_RS03145 at 694.855 kb on - strand, within RR42_RS03145 at 694.912 kb on + strand, within RR42_RS03145 at 694.912 kb on + strand, within RR42_RS03145 at 694.913 kb on - strand, within RR42_RS03145 at 694.913 kb on - strand, within RR42_RS03145 at 694.913 kb on - strand, within RR42_RS03145 at 695.104 kb on + strand, within RR42_RS03145 at 695.104 kb on + strand, within RR42_RS03145 at 695.105 kb on - strand, within RR42_RS03145 at 695.105 kb on - strand, within RR42_RS03145 at 695.105 kb on - strand, within RR42_RS03145 at 695.105 kb on - strand, within RR42_RS03145 at 695.131 kb on + strand, within RR42_RS03145 at 695.132 kb on - strand, within RR42_RS03145 at 695.279 kb on - strand, within RR42_RS03145 at 695.280 kb on + strand, within RR42_RS03145 at 695.281 kb on - strand, within RR42_RS03145 at 695.377 kb on - strand, within RR42_RS03145 at 695.377 kb on - strand, within RR42_RS03145
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 693,084 - +0.1 693,101 - +1.1 693,135 + +0.2 693,204 - +0.0 693,204 - +0.2 693,204 - -0.2 693,286 + +1.8 693,286 + +0.6 693,286 + +3.2 693,287 - -2.8 693,287 - -1.1 693,287 - -2.4 693,289 - +1.0 693,366 - -0.4 693,378 + +0.2 693,390 - -0.8 693,397 + -0.5 693,397 + -0.3 693,412 + +1.8 693,412 + -0.8 693,413 - -2.0 693,465 + -0.4 693,466 - +1.3 693,466 - -1.4 693,529 + +1.2 693,529 + +0.6 693,529 + +1.2 693,530 - +1.4 693,530 - -2.2 693,530 - -1.6 693,530 - +0.4 693,531 + -1.2 693,531 + +0.6 693,531 + -0.4 693,531 + +0.7 693,532 - +3.1 693,532 - +0.8 693,532 - -2.1 693,532 - +1.0 693,532 - -1.7 693,532 - -1.1 693,532 - +0.3 693,532 - -1.1 693,534 - -0.8 693,534 - +0.4 693,534 - +0.2 693,534 - -1.3 693,534 - +0.6 693,543 + +1.5 693,544 - +0.9 693,549 + -0.6 693,549 + -3.3 693,549 + +1.2 693,549 + +1.4 693,550 - +0.1 693,615 - +0.9 693,661 - +1.0 693,684 + -0.4 693,685 - +2.2 693,723 - -0.1 693,799 + -1.4 693,799 + -0.3 693,800 - +0.5 693,800 - +0.0 693,800 - +0.9 693,933 + +0.5 693,933 + +0.6 693,933 + -2.1 693,933 + +0.4 693,933 + -1.6 693,933 + -0.4 693,933 + -0.5 693,934 - +0.5 693,934 - +1.2 693,934 - -1.6 693,934 - -2.8 693,934 - -0.7 693,936 + +0.8 693,937 - -0.5 693,965 + +0.9 694,028 - +0.8 694,066 + +0.6 694,066 + -1.8 694,067 - +0.1 694,168 + RR42_RS03140 0.21 +1.2 694,168 + RR42_RS03140 0.21 -0.4 694,169 - RR42_RS03140 0.22 +0.6 694,169 - RR42_RS03140 0.22 +0.4 694,169 - RR42_RS03140 0.22 +1.9 694,285 + RR42_RS03140 0.46 +0.3 694,324 - RR42_RS03140 0.54 -0.1 694,383 + RR42_RS03140 0.66 -1.1 694,383 + RR42_RS03140 0.66 +2.8 694,383 + RR42_RS03140 0.66 +0.4 694,505 + +0.4 694,505 + -0.0 694,505 + +0.6 694,506 - +1.1 694,667 - +0.2 694,667 - +1.9 694,667 - +1.4 694,671 + +1.6 694,671 + -1.7 694,671 + +0.8 694,671 + +1.1 694,672 - -2.4 694,672 - +1.3 694,672 - -1.7 694,855 - RR42_RS03145 0.12 +1.2 694,855 - RR42_RS03145 0.12 -0.5 694,912 + RR42_RS03145 0.15 -0.4 694,912 + RR42_RS03145 0.15 -1.9 694,913 - RR42_RS03145 0.15 +0.2 694,913 - RR42_RS03145 0.15 -0.8 694,913 - RR42_RS03145 0.15 -1.4 695,104 + RR42_RS03145 0.26 -1.4 695,104 + RR42_RS03145 0.26 -1.1 695,105 - RR42_RS03145 0.26 +1.2 695,105 - RR42_RS03145 0.26 +0.4 695,105 - RR42_RS03145 0.26 -0.2 695,105 - RR42_RS03145 0.26 +1.6 695,131 + RR42_RS03145 0.27 -3.2 695,132 - RR42_RS03145 0.27 -0.8 695,279 - RR42_RS03145 0.35 +1.8 695,280 + RR42_RS03145 0.35 +0.5 695,281 - RR42_RS03145 0.35 +0.2 695,377 - RR42_RS03145 0.41 +2.4 695,377 - RR42_RS03145 0.41 +1.2
Or see this region's nucleotide sequence