Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01970

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01960 and RR42_RS01965 are separated by 208 nucleotidesRR42_RS01965 and RR42_RS01970 are separated by 7 nucleotidesRR42_RS01970 and RR42_RS01975 are separated by 89 nucleotides RR42_RS01960: RR42_RS01960 - transcriptional regulator, at 439,408 to 440,061 _RS01960 RR42_RS01965: RR42_RS01965 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 440,270 to 440,971 _RS01965 RR42_RS01970: RR42_RS01970 - maleylacetoacetate isomerase, at 440,979 to 441,623 _RS01970 RR42_RS01975: RR42_RS01975 - cell division protein FtsY, at 441,713 to 442,858 _RS01975 Position (kb) 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 440.119 kb on + strandat 440.120 kb on - strandat 440.120 kb on - strandat 440.120 kb on - strandat 440.177 kb on + strandat 440.177 kb on + strandat 440.177 kb on + strandat 440.177 kb on + strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.178 kb on - strandat 440.182 kb on + strandat 440.183 kb on - strandat 440.183 kb on - strandat 440.183 kb on - strandat 440.183 kb on - strandat 440.183 kb on - strandat 440.236 kb on + strandat 440.236 kb on + strandat 440.237 kb on - strandat 440.237 kb on - strandat 440.242 kb on - strandat 440.242 kb on - strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.253 kb on + strandat 440.254 kb on - strandat 440.254 kb on - strandat 440.254 kb on - strandat 440.283 kb on + strandat 440.283 kb on + strandat 440.283 kb on + strandat 440.284 kb on - strandat 440.284 kb on - strandat 440.354 kb on + strand, within RR42_RS01965at 440.372 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.456 kb on + strand, within RR42_RS01965at 440.516 kb on + strand, within RR42_RS01965at 440.517 kb on - strand, within RR42_RS01965at 440.831 kb on + strand, within RR42_RS01965at 440.831 kb on + strand, within RR42_RS01965at 440.831 kb on + strand, within RR42_RS01965at 440.832 kb on - strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.873 kb on + strand, within RR42_RS01965at 440.874 kb on - strand, within RR42_RS01965at 440.874 kb on - strand, within RR42_RS01965at 440.874 kb on - strand, within RR42_RS01965at 440.964 kb on + strandat 440.964 kb on + strandat 440.964 kb on + strandat 440.965 kb on - strandat 440.965 kb on - strandat 440.988 kb on + strandat 440.989 kb on - strandat 440.995 kb on - strandat 440.995 kb on - strandat 441.054 kb on + strand, within RR42_RS01970at 441.055 kb on - strand, within RR42_RS01970at 441.055 kb on - strand, within RR42_RS01970at 441.055 kb on - strand, within RR42_RS01970at 441.060 kb on + strand, within RR42_RS01970at 441.060 kb on + strand, within RR42_RS01970at 441.061 kb on - strand, within RR42_RS01970at 441.061 kb on - strand, within RR42_RS01970at 441.061 kb on - strand, within RR42_RS01970at 441.166 kb on + strand, within RR42_RS01970at 441.167 kb on - strand, within RR42_RS01970at 441.195 kb on + strand, within RR42_RS01970at 441.255 kb on + strand, within RR42_RS01970at 441.324 kb on + strand, within RR42_RS01970at 441.324 kb on + strand, within RR42_RS01970at 441.324 kb on + strand, within RR42_RS01970at 441.411 kb on - strand, within RR42_RS01970at 441.621 kb on + strandat 441.621 kb on + strandat 441.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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440,119 + -0.0
440,120 - +1.0
440,120 - -0.1
440,120 - -1.2
440,177 + -2.3
440,177 + -1.8
440,177 + +1.3
440,177 + -2.7
440,178 - +0.4
440,178 - -0.8
440,178 - +1.0
440,178 - -1.0
440,178 - -1.1
440,178 - +1.4
440,182 + -0.5
440,183 - +2.0
440,183 - -3.6
440,183 - +0.7
440,183 - -0.7
440,183 - +0.3
440,236 + -1.2
440,236 + +1.9
440,237 - +1.8
440,237 - +0.1
440,242 - +0.2
440,242 - +0.5
440,253 + +3.2
440,253 + +0.5
440,253 + -0.3
440,253 + -0.3
440,253 + -1.1
440,253 + +0.2
440,253 + -0.1
440,253 + -1.1
440,253 + -2.0
440,254 - +0.7
440,254 - +0.4
440,254 - +0.5
440,283 + +0.1
440,283 + -0.8
440,283 + +3.6
440,284 - +0.8
440,284 - +0.1
440,354 + RR42_RS01965 0.12 +0.6
440,372 + RR42_RS01965 0.15 +0.1
440,456 + RR42_RS01965 0.26 +0.2
440,456 + RR42_RS01965 0.26 +1.0
440,456 + RR42_RS01965 0.26 -2.5
440,456 + RR42_RS01965 0.26 +0.8
440,456 + RR42_RS01965 0.26 -3.3
440,456 + RR42_RS01965 0.26 +0.7
440,456 + RR42_RS01965 0.26 +0.7
440,456 + RR42_RS01965 0.26 +1.0
440,516 + RR42_RS01965 0.35 -1.2
440,517 - RR42_RS01965 0.35 -2.1
440,831 + RR42_RS01965 0.80 -0.2
440,831 + RR42_RS01965 0.80 -3.7
440,831 + RR42_RS01965 0.80 -0.5
440,832 - RR42_RS01965 0.80 +0.1
440,873 + RR42_RS01965 0.86 -0.2
440,873 + RR42_RS01965 0.86 +0.5
440,873 + RR42_RS01965 0.86 -2.9
440,873 + RR42_RS01965 0.86 +3.2
440,873 + RR42_RS01965 0.86 -0.3
440,874 - RR42_RS01965 0.86 -1.1
440,874 - RR42_RS01965 0.86 +0.8
440,874 - RR42_RS01965 0.86 -1.6
440,964 + -1.6
440,964 + +0.8
440,964 + -1.3
440,965 - +0.9
440,965 - +0.5
440,988 + -0.9
440,989 - +2.5
440,995 - +1.7
440,995 - +1.1
441,054 + RR42_RS01970 0.12 +1.3
441,055 - RR42_RS01970 0.12 +1.3
441,055 - RR42_RS01970 0.12 +1.9
441,055 - RR42_RS01970 0.12 -0.2
441,060 + RR42_RS01970 0.13 +1.1
441,060 + RR42_RS01970 0.13 +0.2
441,061 - RR42_RS01970 0.13 +0.3
441,061 - RR42_RS01970 0.13 +1.0
441,061 - RR42_RS01970 0.13 +0.8
441,166 + RR42_RS01970 0.29 -0.6
441,167 - RR42_RS01970 0.29 +0.8
441,195 + RR42_RS01970 0.33 +1.6
441,255 + RR42_RS01970 0.43 +2.7
441,324 + RR42_RS01970 0.53 +0.9
441,324 + RR42_RS01970 0.53 +1.6
441,324 + RR42_RS01970 0.53 +2.0
441,411 - RR42_RS01970 0.67 +2.0
441,621 + +0.4
441,621 + -0.8
441,622 - -0.3

Or see this region's nucleotide sequence