Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01950 and RR42_RS01955 are separated by 85 nucleotides RR42_RS01955 and RR42_RS01960 are separated by 362 nucleotides
RR42_RS01950: RR42_RS01950 - nitrate ABC transporter permease, at 436,702 to 437,640
_RS01950
RR42_RS01955: RR42_RS01955 - nitrate transporter, at 437,726 to 439,045
_RS01955
RR42_RS01960: RR42_RS01960 - transcriptional regulator, at 439,408 to 440,061
_RS01960
Position (kb) 437
438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 436.893 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.957 kb on - strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.004 kb on - strand, within RR42_RS01950 at 437.004 kb on - strand, within RR42_RS01950 at 437.073 kb on + strand, within RR42_RS01950 at 437.074 kb on - strand, within RR42_RS01950 at 437.319 kb on - strand, within RR42_RS01950 at 437.434 kb on + strand, within RR42_RS01950 at 437.862 kb on + strand, within RR42_RS01955 at 437.863 kb on - strand, within RR42_RS01955 at 437.863 kb on - strand, within RR42_RS01955 at 437.863 kb on - strand, within RR42_RS01955 at 437.901 kb on + strand, within RR42_RS01955 at 437.902 kb on - strand, within RR42_RS01955 at 437.976 kb on + strand, within RR42_RS01955 at 437.976 kb on + strand, within RR42_RS01955 at 437.977 kb on - strand, within RR42_RS01955 at 437.997 kb on + strand, within RR42_RS01955 at 437.997 kb on + strand, within RR42_RS01955 at 437.997 kb on + strand, within RR42_RS01955 at 437.997 kb on + strand, within RR42_RS01955 at 438.046 kb on + strand, within RR42_RS01955 at 438.047 kb on - strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.156 kb on + strand, within RR42_RS01955 at 438.156 kb on + strand, within RR42_RS01955 at 438.157 kb on - strand, within RR42_RS01955 at 438.207 kb on + strand, within RR42_RS01955 at 438.444 kb on + strand, within RR42_RS01955 at 438.445 kb on - strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.448 kb on - strand, within RR42_RS01955 at 438.495 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.670 kb on - strand, within RR42_RS01955 at 438.762 kb on + strand, within RR42_RS01955 at 438.762 kb on + strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.887 kb on + strand, within RR42_RS01955 at 439.167 kb on + strand at 439.168 kb on - strand at 439.168 kb on - strand at 439.409 kb on + strand at 439.409 kb on + strand at 439.410 kb on - strand at 439.490 kb on + strand, within RR42_RS01960 at 439.490 kb on + strand, within RR42_RS01960 at 439.490 kb on + strand, within RR42_RS01960 at 439.490 kb on + strand, within RR42_RS01960 at 439.490 kb on + strand, within RR42_RS01960 at 439.491 kb on - strand, within RR42_RS01960 at 439.491 kb on - strand, within RR42_RS01960 at 439.625 kb on + strand, within RR42_RS01960 at 439.679 kb on + strand, within RR42_RS01960 at 439.679 kb on + strand, within RR42_RS01960 at 439.680 kb on - strand, within RR42_RS01960 at 439.680 kb on - strand, within RR42_RS01960
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 436,893 + RR42_RS01950 0.20 +0.8 436,925 + RR42_RS01950 0.24 -2.1 436,925 + RR42_RS01950 0.24 +0.0 436,925 + RR42_RS01950 0.24 -1.5 436,925 + RR42_RS01950 0.24 -1.1 436,925 + RR42_RS01950 0.24 +1.1 436,926 - RR42_RS01950 0.24 -0.5 436,926 - RR42_RS01950 0.24 +0.6 436,926 - RR42_RS01950 0.24 -0.8 436,926 - RR42_RS01950 0.24 +0.1 436,926 - RR42_RS01950 0.24 -0.8 436,926 - RR42_RS01950 0.24 -0.8 436,957 - RR42_RS01950 0.27 -0.5 437,003 + RR42_RS01950 0.32 -1.8 437,003 + RR42_RS01950 0.32 -0.2 437,003 + RR42_RS01950 0.32 -2.1 437,003 + RR42_RS01950 0.32 -0.8 437,003 + RR42_RS01950 0.32 -1.7 437,004 - RR42_RS01950 0.32 +0.5 437,004 - RR42_RS01950 0.32 +1.0 437,073 + RR42_RS01950 0.40 -0.2 437,074 - RR42_RS01950 0.40 +0.5 437,319 - RR42_RS01950 0.66 +0.0 437,434 + RR42_RS01950 0.78 -2.1 437,862 + RR42_RS01955 0.10 -1.9 437,863 - RR42_RS01955 0.10 -3.8 437,863 - RR42_RS01955 0.10 +0.2 437,863 - RR42_RS01955 0.10 -0.1 437,901 + RR42_RS01955 0.13 +2.2 437,902 - RR42_RS01955 0.13 +1.5 437,976 + RR42_RS01955 0.19 -0.3 437,976 + RR42_RS01955 0.19 +0.4 437,977 - RR42_RS01955 0.19 +1.2 437,997 + RR42_RS01955 0.21 -0.1 437,997 + RR42_RS01955 0.21 +0.2 437,997 + RR42_RS01955 0.21 -1.2 437,997 + RR42_RS01955 0.21 +0.4 438,046 + RR42_RS01955 0.24 -0.7 438,047 - RR42_RS01955 0.24 -0.6 438,096 + RR42_RS01955 0.28 +0.5 438,096 + RR42_RS01955 0.28 +1.6 438,096 + RR42_RS01955 0.28 -1.1 438,096 + RR42_RS01955 0.28 -0.4 438,096 + RR42_RS01955 0.28 -0.2 438,096 + RR42_RS01955 0.28 +1.9 438,156 + RR42_RS01955 0.33 +0.6 438,156 + RR42_RS01955 0.33 +0.9 438,157 - RR42_RS01955 0.33 -1.1 438,207 + RR42_RS01955 0.36 +1.2 438,444 + RR42_RS01955 0.54 +0.6 438,445 - RR42_RS01955 0.54 -1.6 438,447 + RR42_RS01955 0.55 -1.1 438,447 + RR42_RS01955 0.55 -2.7 438,447 + RR42_RS01955 0.55 -0.7 438,447 + RR42_RS01955 0.55 -2.7 438,447 + RR42_RS01955 0.55 -0.2 438,447 + RR42_RS01955 0.55 -2.2 438,447 + RR42_RS01955 0.55 +0.0 438,448 - RR42_RS01955 0.55 -1.6 438,495 + RR42_RS01955 0.58 -1.3 438,657 + RR42_RS01955 0.71 -0.1 438,657 + RR42_RS01955 0.71 +2.0 438,657 + RR42_RS01955 0.71 +0.8 438,657 + RR42_RS01955 0.71 -1.1 438,657 + RR42_RS01955 0.71 +0.3 438,658 - RR42_RS01955 0.71 -0.2 438,658 - RR42_RS01955 0.71 +0.6 438,658 - RR42_RS01955 0.71 +0.5 438,658 - RR42_RS01955 0.71 -0.8 438,658 - RR42_RS01955 0.71 +1.2 438,658 - RR42_RS01955 0.71 +0.0 438,670 - RR42_RS01955 0.72 -3.9 438,762 + RR42_RS01955 0.78 -2.9 438,762 + RR42_RS01955 0.78 -1.1 438,763 - RR42_RS01955 0.79 +0.5 438,763 - RR42_RS01955 0.79 +0.8 438,763 - RR42_RS01955 0.79 +0.7 438,763 - RR42_RS01955 0.79 -1.1 438,763 - RR42_RS01955 0.79 +0.6 438,887 + RR42_RS01955 0.88 +0.3 439,167 + -0.4 439,168 - -1.4 439,168 - +1.2 439,409 + +1.8 439,409 + +0.1 439,410 - -0.7 439,490 + RR42_RS01960 0.13 -2.2 439,490 + RR42_RS01960 0.13 -0.6 439,490 + RR42_RS01960 0.13 -0.3 439,490 + RR42_RS01960 0.13 -0.2 439,490 + RR42_RS01960 0.13 -1.1 439,491 - RR42_RS01960 0.13 -0.6 439,491 - RR42_RS01960 0.13 +0.2 439,625 + RR42_RS01960 0.33 +0.2 439,679 + RR42_RS01960 0.41 +1.2 439,679 + RR42_RS01960 0.41 -0.3 439,680 - RR42_RS01960 0.42 -1.3 439,680 - RR42_RS01960 0.42 +1.8
Or see this region's nucleotide sequence