Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01800

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01795 and RR42_RS01800 are separated by 643 nucleotidesRR42_RS01800 and RR42_RS01805 are separated by 272 nucleotides RR42_RS01795: RR42_RS01795 - phosphoenolpyruvate-protein phosphotransferase, at 406,915 to 408,690 _RS01795 RR42_RS01800: RR42_RS01800 - bacterioferritin, at 409,334 to 409,813 _RS01800 RR42_RS01805: RR42_RS01805 - selenophosphate synthase, at 410,086 to 411,153 _RS01805 Position (kb) 409 410Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 408.358 kb on + strand, within RR42_RS01795at 408.358 kb on + strand, within RR42_RS01795at 408.359 kb on - strand, within RR42_RS01795at 408.359 kb on - strand, within RR42_RS01795at 408.359 kb on - strand, within RR42_RS01795at 408.403 kb on + strand, within RR42_RS01795at 408.403 kb on + strand, within RR42_RS01795at 408.404 kb on - strand, within RR42_RS01795at 408.404 kb on - strand, within RR42_RS01795at 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.716 kb on - strandat 408.735 kb on + strandat 408.735 kb on + strandat 408.735 kb on + strandat 408.736 kb on - strandat 408.739 kb on + strandat 408.799 kb on - strandat 408.820 kb on + strandat 408.820 kb on + strandat 408.821 kb on - strandat 408.821 kb on - strandat 408.876 kb on + strandat 408.876 kb on + strandat 408.876 kb on + strandat 408.876 kb on + strandat 408.876 kb on + strandat 408.877 kb on - strandat 408.928 kb on + strandat 408.929 kb on - strandat 408.983 kb on + strandat 408.983 kb on + strandat 408.984 kb on - strandat 408.984 kb on - strandat 409.019 kb on + strandat 409.019 kb on + strandat 409.406 kb on + strand, within RR42_RS01800at 409.407 kb on - strand, within RR42_RS01800at 409.407 kb on - strand, within RR42_RS01800at 409.407 kb on - strand, within RR42_RS01800at 409.427 kb on + strand, within RR42_RS01800at 409.428 kb on - strand, within RR42_RS01800at 409.428 kb on - strand, within RR42_RS01800at 409.466 kb on + strand, within RR42_RS01800at 409.466 kb on + strand, within RR42_RS01800at 409.466 kb on + strand, within RR42_RS01800at 409.467 kb on - strand, within RR42_RS01800at 409.467 kb on - strand, within RR42_RS01800at 409.467 kb on - strand, within RR42_RS01800at 409.648 kb on + strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.652 kb on + strand, within RR42_RS01800at 409.653 kb on - strand, within RR42_RS01800at 409.653 kb on - strand, within RR42_RS01800at 409.653 kb on - strand, within RR42_RS01800at 409.674 kb on - strand, within RR42_RS01800at 409.778 kb on + strandat 409.778 kb on + strandat 409.779 kb on - strandat 409.779 kb on - strandat 409.779 kb on - strandat 409.811 kb on + strandat 409.811 kb on + strandat 409.811 kb on + strandat 410.002 kb on + strandat 410.003 kb on - strandat 410.003 kb on - strandat 410.113 kb on + strandat 410.114 kb on - strandat 410.114 kb on - strandat 410.245 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.614 kb on + strand, within RR42_RS01805at 410.614 kb on + strand, within RR42_RS01805at 410.614 kb on + strand, within RR42_RS01805at 410.615 kb on - strand, within RR42_RS01805at 410.615 kb on - strand, within RR42_RS01805

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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408,358 + RR42_RS01795 0.81 +0.3
408,358 + RR42_RS01795 0.81 -1.4
408,359 - RR42_RS01795 0.81 -3.6
408,359 - RR42_RS01795 0.81 -3.3
408,359 - RR42_RS01795 0.81 -1.2
408,403 + RR42_RS01795 0.84 -0.8
408,403 + RR42_RS01795 0.84 -3.2
408,404 - RR42_RS01795 0.84 -2.7
408,404 - RR42_RS01795 0.84 +2.7
408,649 + +0.5
408,649 + -1.0
408,649 + -0.8
408,649 + -2.5
408,649 + +0.2
408,650 - -3.2
408,650 - -1.3
408,650 - -1.6
408,716 - +3.2
408,735 + +0.3
408,735 + -1.1
408,735 + -2.3
408,736 - +0.8
408,739 + -0.8
408,799 - +2.2
408,820 + +0.7
408,820 + -0.1
408,821 - +2.0
408,821 - +1.1
408,876 + -2.8
408,876 + +1.5
408,876 + -0.6
408,876 + +0.0
408,876 + -0.3
408,877 - -1.6
408,928 + -1.1
408,929 - -1.5
408,983 + +0.6
408,983 + +0.2
408,984 - -3.1
408,984 - +1.3
409,019 + -1.3
409,019 + -0.0
409,406 + RR42_RS01800 0.15 -0.2
409,407 - RR42_RS01800 0.15 -1.5
409,407 - RR42_RS01800 0.15 -2.8
409,407 - RR42_RS01800 0.15 -0.4
409,427 + RR42_RS01800 0.19 +0.7
409,428 - RR42_RS01800 0.20 -0.8
409,428 - RR42_RS01800 0.20 -1.9
409,466 + RR42_RS01800 0.28 -3.3
409,466 + RR42_RS01800 0.28 -2.6
409,466 + RR42_RS01800 0.28 +2.2
409,467 - RR42_RS01800 0.28 -3.3
409,467 - RR42_RS01800 0.28 -1.1
409,467 - RR42_RS01800 0.28 -2.3
409,648 + RR42_RS01800 0.65 +1.2
409,649 - RR42_RS01800 0.66 -1.1
409,649 - RR42_RS01800 0.66 +0.9
409,649 - RR42_RS01800 0.66 -1.9
409,649 - RR42_RS01800 0.66 -1.2
409,652 + RR42_RS01800 0.66 +0.2
409,653 - RR42_RS01800 0.66 -2.8
409,653 - RR42_RS01800 0.66 -1.3
409,653 - RR42_RS01800 0.66 -1.6
409,674 - RR42_RS01800 0.71 +1.1
409,778 + +0.2
409,778 + +1.2
409,779 - -1.2
409,779 - +1.0
409,779 - +0.3
409,811 + +0.6
409,811 + +1.2
409,811 + -0.6
410,002 + +0.5
410,003 - -1.1
410,003 - -1.1
410,113 + -0.2
410,114 - -1.4
410,114 - -0.3
410,245 + RR42_RS01805 0.15 +1.7
410,368 + RR42_RS01805 0.26 -1.8
410,368 + RR42_RS01805 0.26 -0.8
410,368 + RR42_RS01805 0.26 +0.9
410,368 + RR42_RS01805 0.26 -0.6
410,368 + RR42_RS01805 0.26 +0.7
410,368 + RR42_RS01805 0.26 -2.3
410,369 - RR42_RS01805 0.26 -0.3
410,369 - RR42_RS01805 0.26 -2.6
410,369 - RR42_RS01805 0.26 -0.5
410,369 - RR42_RS01805 0.26 -0.4
410,369 - RR42_RS01805 0.26 +0.1
410,614 + RR42_RS01805 0.49 -2.3
410,614 + RR42_RS01805 0.49 +1.2
410,614 + RR42_RS01805 0.49 -1.2
410,615 - RR42_RS01805 0.50 +0.9
410,615 - RR42_RS01805 0.50 +1.2

Or see this region's nucleotide sequence