Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01560

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01555 and RR42_RS01560 are separated by 235 nucleotidesRR42_RS01560 and RR42_RS01565 are separated by 362 nucleotidesRR42_RS01565 and RR42_RS01570 are separated by 39 nucleotides RR42_RS01555: RR42_RS01555 - aminopeptidase, at 349,421 to 350,611 _RS01555 RR42_RS01560: RR42_RS01560 - diguanylate cyclase, at 350,847 to 352,628 _RS01560 RR42_RS01565: RR42_RS01565 - hypothetical protein, at 352,991 to 353,563 _RS01565 RR42_RS01570: RR42_RS01570 - GntR family transcriptional regulator, at 353,603 to 355,120 _RS01570 Position (kb) 350 351 352 353Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 350.202 kb on - strand, within RR42_RS01555at 350.204 kb on + strand, within RR42_RS01555at 350.204 kb on + strand, within RR42_RS01555at 350.205 kb on - strand, within RR42_RS01555at 350.205 kb on - strand, within RR42_RS01555at 350.205 kb on - strand, within RR42_RS01555at 350.205 kb on - strand, within RR42_RS01555at 350.205 kb on - strand, within RR42_RS01555at 350.265 kb on - strand, within RR42_RS01555at 350.381 kb on + strand, within RR42_RS01555at 350.382 kb on - strand, within RR42_RS01555at 350.382 kb on - strand, within RR42_RS01555at 350.382 kb on - strand, within RR42_RS01555at 350.501 kb on + strandat 350.501 kb on + strandat 350.501 kb on + strandat 350.501 kb on + strandat 350.501 kb on + strandat 350.501 kb on + strandat 350.501 kb on + strandat 350.501 kb on + strandat 350.501 kb on + strandat 350.502 kb on - strandat 350.502 kb on - strandat 350.502 kb on - strandat 350.502 kb on - strandat 350.502 kb on - strandat 350.502 kb on - strandat 350.502 kb on - strandat 350.502 kb on - strandat 350.508 kb on - strandat 350.664 kb on + strandat 350.665 kb on - strandat 350.680 kb on + strandat 350.681 kb on - strandat 351.099 kb on + strand, within RR42_RS01560at 351.102 kb on + strand, within RR42_RS01560at 351.157 kb on - strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.159 kb on + strand, within RR42_RS01560at 351.160 kb on - strand, within RR42_RS01560at 351.160 kb on - strand, within RR42_RS01560at 351.160 kb on - strand, within RR42_RS01560at 351.160 kb on - strand, within RR42_RS01560at 351.703 kb on + strand, within RR42_RS01560at 351.774 kb on + strand, within RR42_RS01560at 351.774 kb on + strand, within RR42_RS01560at 351.774 kb on + strand, within RR42_RS01560at 351.774 kb on + strand, within RR42_RS01560at 351.775 kb on - strand, within RR42_RS01560at 351.775 kb on - strand, within RR42_RS01560at 351.775 kb on - strand, within RR42_RS01560at 351.775 kb on - strand, within RR42_RS01560at 351.775 kb on - strand, within RR42_RS01560at 352.081 kb on + strand, within RR42_RS01560at 352.082 kb on - strand, within RR42_RS01560at 352.082 kb on - strand, within RR42_RS01560at 352.082 kb on - strand, within RR42_RS01560at 352.082 kb on - strand, within RR42_RS01560at 352.347 kb on + strand, within RR42_RS01560at 352.348 kb on - strand, within RR42_RS01560at 352.551 kb on + strandat 352.552 kb on - strandat 352.685 kb on + strandat 352.685 kb on + strandat 352.686 kb on - strandat 352.736 kb on + strandat 352.737 kb on - strandat 352.754 kb on + strandat 352.765 kb on - strandat 352.769 kb on - strandat 352.821 kb on + strandat 352.821 kb on + strandat 352.822 kb on - strandat 352.901 kb on - strandat 352.968 kb on + strandat 352.968 kb on + strandat 352.969 kb on - strandat 352.969 kb on - strandat 352.969 kb on - strandat 352.969 kb on - strandat 352.996 kb on + strandat 352.997 kb on - strandat 353.034 kb on + strandat 353.035 kb on + strandat 353.035 kb on + strandat 353.035 kb on + strandat 353.035 kb on + strandat 353.035 kb on + strandat 353.035 kb on + strandat 353.035 kb on + strandat 353.035 kb on + strandat 353.035 kb on + strandat 353.036 kb on - strandat 353.036 kb on - strandat 353.036 kb on - strandat 353.036 kb on - strandat 353.036 kb on - strandat 353.036 kb on - strandat 353.036 kb on - strandat 353.036 kb on - strandat 353.144 kb on + strand, within RR42_RS01565at 353.144 kb on + strand, within RR42_RS01565at 353.144 kb on + strand, within RR42_RS01565at 353.145 kb on - strand, within RR42_RS01565at 353.145 kb on - strand, within RR42_RS01565at 353.255 kb on - strand, within RR42_RS01565at 353.371 kb on + strand, within RR42_RS01565at 353.372 kb on - strand, within RR42_RS01565at 353.372 kb on - strand, within RR42_RS01565at 353.480 kb on + strand, within RR42_RS01565at 353.543 kb on + strandat 353.544 kb on - strandat 353.544 kb on - strandat 353.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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350,202 - RR42_RS01555 0.66 -0.9
350,204 + RR42_RS01555 0.66 +0.5
350,204 + RR42_RS01555 0.66 +1.1
350,205 - RR42_RS01555 0.66 +0.9
350,205 - RR42_RS01555 0.66 -0.5
350,205 - RR42_RS01555 0.66 +0.3
350,205 - RR42_RS01555 0.66 -2.2
350,205 - RR42_RS01555 0.66 -0.6
350,265 - RR42_RS01555 0.71 +0.5
350,381 + RR42_RS01555 0.81 +0.0
350,382 - RR42_RS01555 0.81 -0.7
350,382 - RR42_RS01555 0.81 -2.3
350,382 - RR42_RS01555 0.81 +1.5
350,501 + -0.5
350,501 + -0.9
350,501 + +0.1
350,501 + -0.3
350,501 + +0.4
350,501 + +0.0
350,501 + +1.0
350,501 + -1.1
350,501 + -0.5
350,502 - +0.7
350,502 - +1.1
350,502 - +0.2
350,502 - -1.6
350,502 - -0.9
350,502 - +0.0
350,502 - -0.3
350,502 - -0.7
350,508 - -0.1
350,664 + -1.4
350,665 - +1.4
350,680 + -3.1
350,681 - -2.1
351,099 + RR42_RS01560 0.14 +0.1
351,102 + RR42_RS01560 0.14 -1.3
351,157 - RR42_RS01560 0.17 +0.3
351,159 + RR42_RS01560 0.18 -0.1
351,159 + RR42_RS01560 0.18 -0.4
351,159 + RR42_RS01560 0.18 +0.3
351,159 + RR42_RS01560 0.18 +0.8
351,159 + RR42_RS01560 0.18 +0.3
351,159 + RR42_RS01560 0.18 -1.0
351,159 + RR42_RS01560 0.18 +0.9
351,159 + RR42_RS01560 0.18 -0.6
351,159 + RR42_RS01560 0.18 -1.1
351,159 + RR42_RS01560 0.18 +0.8
351,159 + RR42_RS01560 0.18 +0.7
351,159 + RR42_RS01560 0.18 +1.1
351,159 + RR42_RS01560 0.18 +0.1
351,160 - RR42_RS01560 0.18 +0.6
351,160 - RR42_RS01560 0.18 -2.1
351,160 - RR42_RS01560 0.18 -0.5
351,160 - RR42_RS01560 0.18 +1.8
351,703 + RR42_RS01560 0.48 -1.5
351,774 + RR42_RS01560 0.52 -0.0
351,774 + RR42_RS01560 0.52 +0.6
351,774 + RR42_RS01560 0.52 +0.5
351,774 + RR42_RS01560 0.52 -0.3
351,775 - RR42_RS01560 0.52 -1.1
351,775 - RR42_RS01560 0.52 -0.7
351,775 - RR42_RS01560 0.52 -0.4
351,775 - RR42_RS01560 0.52 -0.4
351,775 - RR42_RS01560 0.52 -1.2
352,081 + RR42_RS01560 0.69 +0.7
352,082 - RR42_RS01560 0.69 -1.3
352,082 - RR42_RS01560 0.69 -0.6
352,082 - RR42_RS01560 0.69 -0.3
352,082 - RR42_RS01560 0.69 -2.6
352,347 + RR42_RS01560 0.84 -0.8
352,348 - RR42_RS01560 0.84 -1.5
352,551 + -1.4
352,552 - +0.7
352,685 + -0.2
352,685 + +1.3
352,686 - +0.5
352,736 + -1.4
352,737 - +0.9
352,754 + -1.1
352,765 - +1.5
352,769 - +0.2
352,821 + +1.5
352,821 + +0.3
352,822 - +1.5
352,901 - +2.0
352,968 + +0.0
352,968 + -0.0
352,969 - +0.6
352,969 - +1.6
352,969 - -0.6
352,969 - +1.5
352,996 + -1.4
352,997 - -0.2
353,034 + +0.6
353,035 + -0.0
353,035 + +1.9
353,035 + -0.9
353,035 + -0.2
353,035 + +1.0
353,035 + -0.4
353,035 + +0.9
353,035 + +1.8
353,035 + -2.5
353,036 - +0.6
353,036 - -1.1
353,036 - +0.2
353,036 - -0.7
353,036 - +0.5
353,036 - -0.6
353,036 - -0.3
353,036 - -0.3
353,144 + RR42_RS01565 0.27 -1.9
353,144 + RR42_RS01565 0.27 +0.6
353,144 + RR42_RS01565 0.27 +0.4
353,145 - RR42_RS01565 0.27 +0.6
353,145 - RR42_RS01565 0.27 -0.4
353,255 - RR42_RS01565 0.46 -1.4
353,371 + RR42_RS01565 0.66 +1.0
353,372 - RR42_RS01565 0.66 +0.4
353,372 - RR42_RS01565 0.66 +1.6
353,480 + RR42_RS01565 0.85 +1.5
353,543 + +0.7
353,544 - +1.3
353,544 - +0.9
353,544 - +0.6

Or see this region's nucleotide sequence