Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00985

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00975 and RR42_RS00980 are separated by 72 nucleotidesRR42_RS00980 and RR42_RS00985 are separated by 58 nucleotidesRR42_RS00985 and RR42_RS00990 are separated by 10 nucleotidesRR42_RS00990 and RR42_RS00995 are separated by 158 nucleotides RR42_RS00975: RR42_RS00975 - MBL fold metallo-hydrolase, at 230,222 to 231,154 _RS00975 RR42_RS00980: RR42_RS00980 - hypothetical protein, at 231,227 to 231,823 _RS00980 RR42_RS00985: RR42_RS00985 - acetyltransferase, at 231,882 to 232,496 _RS00985 RR42_RS00990: RR42_RS00990 - GntR family transcriptional regulator, at 232,507 to 233,244 _RS00990 RR42_RS00995: RR42_RS00995 - sodium:cation symporter, at 233,403 to 234,932 _RS00995 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2 3at 230.900 kb on + strand, within RR42_RS00975at 230.900 kb on + strand, within RR42_RS00975at 230.901 kb on - strand, within RR42_RS00975at 231.141 kb on - strandat 231.141 kb on - strandat 231.392 kb on + strand, within RR42_RS00980at 231.392 kb on + strand, within RR42_RS00980at 231.392 kb on + strand, within RR42_RS00980at 231.392 kb on + strand, within RR42_RS00980at 231.393 kb on - strand, within RR42_RS00980at 231.393 kb on - strand, within RR42_RS00980at 231.393 kb on - strand, within RR42_RS00980at 231.393 kb on - strand, within RR42_RS00980at 231.470 kb on + strand, within RR42_RS00980at 231.979 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.013 kb on + strand, within RR42_RS00985at 232.014 kb on - strand, within RR42_RS00985at 232.014 kb on - strand, within RR42_RS00985at 232.077 kb on + strand, within RR42_RS00985at 232.078 kb on - strand, within RR42_RS00985at 232.078 kb on - strand, within RR42_RS00985at 232.091 kb on - strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.117 kb on - strand, within RR42_RS00985at 232.152 kb on + strand, within RR42_RS00985at 232.153 kb on - strand, within RR42_RS00985at 232.239 kb on + strand, within RR42_RS00985at 232.239 kb on + strand, within RR42_RS00985at 232.239 kb on + strand, within RR42_RS00985at 232.239 kb on + strand, within RR42_RS00985at 232.240 kb on - strand, within RR42_RS00985at 232.240 kb on - strand, within RR42_RS00985at 232.295 kb on + strand, within RR42_RS00985at 232.295 kb on + strand, within RR42_RS00985at 232.295 kb on + strand, within RR42_RS00985at 232.295 kb on + strand, within RR42_RS00985at 232.296 kb on - strand, within RR42_RS00985at 232.296 kb on - strand, within RR42_RS00985at 232.296 kb on - strand, within RR42_RS00985at 232.296 kb on - strand, within RR42_RS00985at 232.395 kb on + strand, within RR42_RS00985at 232.396 kb on - strand, within RR42_RS00985at 232.396 kb on - strand, within RR42_RS00985at 232.416 kb on + strand, within RR42_RS00985at 232.442 kb on + strandat 232.442 kb on + strandat 232.443 kb on - strandat 232.443 kb on - strandat 232.443 kb on - strandat 232.508 kb on + strandat 232.508 kb on + strandat 232.537 kb on - strandat 232.553 kb on + strandat 232.554 kb on - strandat 232.751 kb on + strand, within RR42_RS00990at 232.751 kb on + strand, within RR42_RS00990at 232.751 kb on + strand, within RR42_RS00990at 232.751 kb on + strand, within RR42_RS00990at 232.890 kb on + strand, within RR42_RS00990at 232.977 kb on - strand, within RR42_RS00990at 232.992 kb on + strand, within RR42_RS00990at 232.993 kb on - strand, within RR42_RS00990at 232.993 kb on - strand, within RR42_RS00990at 232.993 kb on - strand, within RR42_RS00990at 233.247 kb on - strandat 233.452 kb on + strandat 233.457 kb on + strandat 233.457 kb on + strandat 233.458 kb on - strandat 233.458 kb on - strandat 233.458 kb on - strandat 233.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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230,900 + RR42_RS00975 0.73 +1.7
230,900 + RR42_RS00975 0.73 -0.1
230,901 - RR42_RS00975 0.73 +0.7
231,141 - +0.0
231,141 - -0.1
231,392 + RR42_RS00980 0.28 -1.7
231,392 + RR42_RS00980 0.28 +0.9
231,392 + RR42_RS00980 0.28 +1.5
231,392 + RR42_RS00980 0.28 +0.5
231,393 - RR42_RS00980 0.28 -0.7
231,393 - RR42_RS00980 0.28 -0.4
231,393 - RR42_RS00980 0.28 -1.9
231,393 - RR42_RS00980 0.28 +3.1
231,470 + RR42_RS00980 0.41 -2.4
231,979 + RR42_RS00985 0.16 -0.6
232,011 + RR42_RS00985 0.21 -0.2
232,011 + RR42_RS00985 0.21 -0.8
232,011 + RR42_RS00985 0.21 -0.2
232,011 + RR42_RS00985 0.21 -1.0
232,013 + RR42_RS00985 0.21 -1.0
232,014 - RR42_RS00985 0.21 +0.6
232,014 - RR42_RS00985 0.21 +0.3
232,077 + RR42_RS00985 0.32 +0.9
232,078 - RR42_RS00985 0.32 +0.9
232,078 - RR42_RS00985 0.32 +1.9
232,091 - RR42_RS00985 0.34 +0.6
232,116 + RR42_RS00985 0.38 -0.2
232,116 + RR42_RS00985 0.38 +0.4
232,116 + RR42_RS00985 0.38 +0.4
232,116 + RR42_RS00985 0.38 -0.7
232,117 - RR42_RS00985 0.38 +0.4
232,152 + RR42_RS00985 0.44 +0.7
232,153 - RR42_RS00985 0.44 +1.1
232,239 + RR42_RS00985 0.58 -1.0
232,239 + RR42_RS00985 0.58 +0.1
232,239 + RR42_RS00985 0.58 +0.9
232,239 + RR42_RS00985 0.58 +0.6
232,240 - RR42_RS00985 0.58 -2.7
232,240 - RR42_RS00985 0.58 +1.6
232,295 + RR42_RS00985 0.67 -0.9
232,295 + RR42_RS00985 0.67 -2.6
232,295 + RR42_RS00985 0.67 +0.1
232,295 + RR42_RS00985 0.67 +1.1
232,296 - RR42_RS00985 0.67 -2.0
232,296 - RR42_RS00985 0.67 -0.8
232,296 - RR42_RS00985 0.67 +0.3
232,296 - RR42_RS00985 0.67 +0.7
232,395 + RR42_RS00985 0.83 -1.7
232,396 - RR42_RS00985 0.84 +2.1
232,396 - RR42_RS00985 0.84 +0.8
232,416 + RR42_RS00985 0.87 -0.1
232,442 + -1.8
232,442 + +0.1
232,443 - -1.2
232,443 - -0.7
232,443 - +1.0
232,508 + +1.5
232,508 + -0.5
232,537 - -1.0
232,553 + -0.4
232,554 - +0.9
232,751 + RR42_RS00990 0.33 -0.8
232,751 + RR42_RS00990 0.33 -1.2
232,751 + RR42_RS00990 0.33 +0.6
232,751 + RR42_RS00990 0.33 +0.3
232,890 + RR42_RS00990 0.52 -0.2
232,977 - RR42_RS00990 0.64 -1.2
232,992 + RR42_RS00990 0.66 -1.8
232,993 - RR42_RS00990 0.66 +1.1
232,993 - RR42_RS00990 0.66 +1.2
232,993 - RR42_RS00990 0.66 -0.1
233,247 - -0.4
233,452 + +1.2
233,457 + +0.5
233,457 + +0.2
233,458 - -1.0
233,458 - -0.4
233,458 - -1.7
233,458 - -1.0

Or see this region's nucleotide sequence