Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00710 and RR42_RS00715 are separated by 896 nucleotides RR42_RS00715 and RR42_RS00720 are separated by 219 nucleotides
RR42_RS00710: RR42_RS00710 - ADP-heptose synthase, at 179,359 to 179,847
_RS00710
RR42_RS00715: RR42_RS00715 - ferritin, at 180,744 to 181,607
_RS00715
RR42_RS00720: RR42_RS00720 - patatin, at 181,827 to 183,068
_RS00720
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 179.937 kb on + strand at 179.937 kb on + strand at 179.937 kb on + strand at 179.937 kb on + strand at 179.938 kb on - strand at 180.371 kb on - strand at 180.371 kb on - strand at 180.371 kb on - strand at 180.371 kb on - strand at 180.603 kb on + strand at 180.604 kb on - strand at 180.604 kb on - strand at 180.613 kb on + strand at 180.614 kb on - strand at 180.745 kb on + strand at 180.745 kb on + strand at 180.745 kb on + strand at 180.745 kb on + strand at 180.746 kb on - strand at 180.746 kb on - strand at 180.858 kb on - strand, within RR42_RS00715 at 180.858 kb on - strand, within RR42_RS00715 at 181.103 kb on - strand, within RR42_RS00715 at 181.166 kb on - strand, within RR42_RS00715 at 181.611 kb on - strand at 181.721 kb on - strand at 181.773 kb on - strand at 181.773 kb on - strand at 181.773 kb on - strand at 181.773 kb on - strand at 181.824 kb on - strand at 181.866 kb on - strand at 181.866 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 182.018 kb on - strand, within RR42_RS00720 at 182.018 kb on - strand, within RR42_RS00720 at 182.584 kb on + strand, within RR42_RS00720 at 182.585 kb on - strand, within RR42_RS00720 at 182.585 kb on - strand, within RR42_RS00720
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 179,937 + -0.6 179,937 + -1.1 179,937 + +0.5 179,937 + -0.5 179,938 - +0.4 180,371 - -2.0 180,371 - -0.4 180,371 - +0.5 180,371 - +0.9 180,603 + -0.2 180,604 - +0.4 180,604 - -0.2 180,613 + +0.8 180,614 - +2.5 180,745 + -0.0 180,745 + +0.5 180,745 + +0.7 180,745 + +0.2 180,746 - +0.5 180,746 - +0.7 180,858 - RR42_RS00715 0.13 +2.3 180,858 - RR42_RS00715 0.13 +2.8 181,103 - RR42_RS00715 0.42 +1.4 181,166 - RR42_RS00715 0.49 +3.5 181,611 - +1.0 181,721 - +0.7 181,773 - -0.7 181,773 - +0.8 181,773 - -0.2 181,773 - +0.9 181,824 - +0.2 181,866 - +0.7 181,866 - -0.5 181,925 - -3.3 181,925 - -1.0 181,925 - -0.5 181,925 - -0.5 181,925 - -1.2 181,925 - -0.2 181,925 - +0.8 182,018 - RR42_RS00720 0.15 +0.8 182,018 - RR42_RS00720 0.15 +1.8 182,584 + RR42_RS00720 0.61 -0.6 182,585 - RR42_RS00720 0.61 -1.7 182,585 - RR42_RS00720 0.61 -1.1
Or see this region's nucleotide sequence