Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00615

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00605 and RR42_RS00610 are separated by 169 nucleotidesRR42_RS00610 and RR42_RS00615 are separated by 35 nucleotidesRR42_RS00615 and RR42_RS00620 overlap by 4 nucleotides RR42_RS00605: RR42_RS00605 - glutamyl-tRNA amidotransferase, at 158,952 to 160,412 _RS00605 RR42_RS00610: RR42_RS00610 - hypothetical protein, at 160,582 to 161,250 _RS00610 RR42_RS00615: RR42_RS00615 - recombinase XerC, at 161,286 to 162,410 _RS00615 RR42_RS00620: RR42_RS00620 - XRE family transcriptional regulator, at 162,407 to 163,366 _RS00620 Position (kb) 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 160.410 kb on + strandat 160.420 kb on - strandat 160.457 kb on + strandat 160.458 kb on - strandat 160.550 kb on - strandat 160.606 kb on + strandat 160.606 kb on + strandat 160.607 kb on - strandat 160.861 kb on + strandat 160.862 kb on - strand, within RR42_RS00610at 160.939 kb on + strand, within RR42_RS00610at 160.939 kb on + strand, within RR42_RS00610at 160.940 kb on - strand, within RR42_RS00610at 160.940 kb on - strand, within RR42_RS00610at 160.940 kb on - strand, within RR42_RS00610at 160.940 kb on - strand, within RR42_RS00610at 161.011 kb on + strand, within RR42_RS00610at 161.195 kb on - strandat 161.422 kb on - strand, within RR42_RS00615at 161.505 kb on - strand, within RR42_RS00615at 161.772 kb on + strand, within RR42_RS00615at 161.772 kb on + strand, within RR42_RS00615at 161.820 kb on + strand, within RR42_RS00615at 161.839 kb on - strand, within RR42_RS00615at 162.051 kb on - strand, within RR42_RS00615at 162.219 kb on + strand, within RR42_RS00615at 162.219 kb on + strand, within RR42_RS00615at 162.219 kb on + strand, within RR42_RS00615at 162.219 kb on + strand, within RR42_RS00615at 162.220 kb on - strand, within RR42_RS00615at 162.220 kb on - strand, within RR42_RS00615at 162.255 kb on + strand, within RR42_RS00615at 162.255 kb on + strand, within RR42_RS00615at 162.479 kb on + strandat 162.479 kb on + strandat 162.479 kb on + strandat 162.480 kb on - strandat 162.480 kb on - strandat 162.519 kb on + strand, within RR42_RS00620at 162.519 kb on + strand, within RR42_RS00620at 162.538 kb on + strand, within RR42_RS00620at 162.538 kb on + strand, within RR42_RS00620at 162.538 kb on + strand, within RR42_RS00620at 162.538 kb on + strand, within RR42_RS00620at 162.545 kb on + strand, within RR42_RS00620at 162.545 kb on + strand, within RR42_RS00620at 162.545 kb on + strand, within RR42_RS00620at 162.545 kb on + strand, within RR42_RS00620at 162.546 kb on - strand, within RR42_RS00620at 162.546 kb on - strand, within RR42_RS00620at 162.546 kb on - strand, within RR42_RS00620at 162.546 kb on - strand, within RR42_RS00620at 162.588 kb on + strand, within RR42_RS00620at 162.588 kb on + strand, within RR42_RS00620at 162.588 kb on + strand, within RR42_RS00620at 162.849 kb on + strand, within RR42_RS00620at 162.849 kb on + strand, within RR42_RS00620at 162.849 kb on + strand, within RR42_RS00620at 162.849 kb on + strand, within RR42_RS00620at 162.850 kb on - strand, within RR42_RS00620at 162.850 kb on - strand, within RR42_RS00620at 162.850 kb on - strand, within RR42_RS00620at 162.850 kb on - strand, within RR42_RS00620at 162.850 kb on - strand, within RR42_RS00620

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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160,410 + -1.8
160,420 - -3.1
160,457 + -0.5
160,458 - -1.7
160,550 - -1.9
160,606 + -1.2
160,606 + -1.0
160,607 - -0.2
160,861 + +1.4
160,862 - RR42_RS00610 0.42 -0.3
160,939 + RR42_RS00610 0.53 +0.7
160,939 + RR42_RS00610 0.53 -1.5
160,940 - RR42_RS00610 0.54 -0.7
160,940 - RR42_RS00610 0.54 -0.5
160,940 - RR42_RS00610 0.54 +1.5
160,940 - RR42_RS00610 0.54 -0.9
161,011 + RR42_RS00610 0.64 -0.4
161,195 - -2.2
161,422 - RR42_RS00615 0.12 -0.4
161,505 - RR42_RS00615 0.19 -0.8
161,772 + RR42_RS00615 0.43 +0.3
161,772 + RR42_RS00615 0.43 +2.1
161,820 + RR42_RS00615 0.47 +0.6
161,839 - RR42_RS00615 0.49 -0.8
162,051 - RR42_RS00615 0.68 -0.6
162,219 + RR42_RS00615 0.83 +1.4
162,219 + RR42_RS00615 0.83 +1.4
162,219 + RR42_RS00615 0.83 -3.6
162,219 + RR42_RS00615 0.83 -1.2
162,220 - RR42_RS00615 0.83 -1.3
162,220 - RR42_RS00615 0.83 +0.6
162,255 + RR42_RS00615 0.86 +0.4
162,255 + RR42_RS00615 0.86 -1.0
162,479 + -0.4
162,479 + +0.7
162,479 + +1.8
162,480 - +0.6
162,480 - -1.0
162,519 + RR42_RS00620 0.12 -2.7
162,519 + RR42_RS00620 0.12 +0.6
162,538 + RR42_RS00620 0.14 -0.3
162,538 + RR42_RS00620 0.14 -0.6
162,538 + RR42_RS00620 0.14 +1.8
162,538 + RR42_RS00620 0.14 +0.5
162,545 + RR42_RS00620 0.14 -0.8
162,545 + RR42_RS00620 0.14 -0.1
162,545 + RR42_RS00620 0.14 -2.1
162,545 + RR42_RS00620 0.14 +1.3
162,546 - RR42_RS00620 0.14 -0.7
162,546 - RR42_RS00620 0.14 -2.3
162,546 - RR42_RS00620 0.14 +0.6
162,546 - RR42_RS00620 0.14 -0.6
162,588 + RR42_RS00620 0.19 -2.0
162,588 + RR42_RS00620 0.19 -1.1
162,588 + RR42_RS00620 0.19 -1.0
162,849 + RR42_RS00620 0.46 -0.6
162,849 + RR42_RS00620 0.46 -1.5
162,849 + RR42_RS00620 0.46 +1.5
162,849 + RR42_RS00620 0.46 -1.0
162,850 - RR42_RS00620 0.46 -0.6
162,850 - RR42_RS00620 0.46 +0.1
162,850 - RR42_RS00620 0.46 -1.8
162,850 - RR42_RS00620 0.46 +1.7
162,850 - RR42_RS00620 0.46 -1.6

Or see this region's nucleotide sequence