Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00025

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
7,032	+				-1.6
7,033	-				+1.0
7,037	+				+0.0
7,037	+				-0.6
7,093	-				+1.1
7,098	+				+0.2
7,099	-				+0.9
7,099	-				-0.6
7,151	+				+0.4
7,304	+		RR42_RS00020	0.28	-0.3
7,305	-		RR42_RS00020	0.28	+0.1
7,326	+		RR42_RS00020	0.31	+0.9
7,329	+		RR42_RS00020	0.31	+2.0
7,352	+		RR42_RS00020	0.35	+1.6
7,402	-		RR42_RS00020	0.43	+1.4
7,607	+		RR42_RS00020	0.75	-1.5
7,608	-		RR42_RS00020	0.75	-2.0
7,608	-		RR42_RS00020	0.75	+0.9
7,642	-		RR42_RS00020	0.80	+0.0
7,663	+		RR42_RS00020	0.83	+0.4
7,768	+				-0.8
7,784	+				-0.6
7,785	-				-1.6
7,853	-				-2.2
7,879	-				-1.2
7,939	+				-0.4
7,956	+				-0.5
7,971	+				+0.9
7,972	-				-1.6
7,972	-				+1.3
7,973	+				+2.0
7,975	+				+1.4
7,976	-				+0.4
7,976	-				-0.7
8,140	+				+1.0
8,189	+				+0.8
8,253	+				+1.5
8,253	+				-0.9
8,253	+				+0.5
8,253	+				-1.5
8,253	+				+2.0
8,253	+				-1.8
8,257	+				-1.3
8,257	+				-1.1
8,257	+				+1.2
8,257	+				-0.3
8,257	+				+0.7
8,257	+				-0.3
8,258	-				-0.1
8,258	-				+0.9
8,258	-				+0.4
8,258	-				+0.9
8,258	-				+0.1
8,312	+		RR42_RS00025	0.12	-0.9
8,465	+		RR42_RS00025	0.17	+0.7
8,465	+		RR42_RS00025	0.17	-2.3
8,466	-		RR42_RS00025	0.17	-0.2
8,466	-		RR42_RS00025	0.17	+0.6
8,755	+		RR42_RS00025	0.28	-1.6
8,755	+		RR42_RS00025	0.28	-0.5
8,758	+		RR42_RS00025	0.28	-0.1
8,758	+		RR42_RS00025	0.28	+1.4
8,758	+		RR42_RS00025	0.28	+0.0
8,897	-		RR42_RS00025	0.33	+0.2
8,906	+		RR42_RS00025	0.33	+2.0
8,906	+		RR42_RS00025	0.33	-1.6
8,906	+		RR42_RS00025	0.33	-0.6
8,907	-		RR42_RS00025	0.33	-0.0
8,955	-		RR42_RS00025	0.35	+0.4
9,104	+		RR42_RS00025	0.40	-1.2
9,104	+		RR42_RS00025	0.40	-1.5
9,105	-		RR42_RS00025	0.40	-1.8
9,123	+		RR42_RS00025	0.41	+1.2
9,158	-		RR42_RS00025	0.42	+0.7
9,158	-		RR42_RS00025	0.42	-0.2
9,173	+		RR42_RS00025	0.43	+0.2
9,295	+		RR42_RS00025	0.47	+0.6
9,297	-		RR42_RS00025	0.47	+0.9
9,308	-		RR42_RS00025	0.48	+1.4
9,354	-		RR42_RS00025	0.49	+0.8
9,416	-		RR42_RS00025	0.52	+1.2
9,442	+		RR42_RS00025	0.53	+4.4
9,442	+		RR42_RS00025	0.53	+0.6
9,442	+		RR42_RS00025	0.53	+0.6
9,443	-		RR42_RS00025	0.53	+2.2
9,443	-		RR42_RS00025	0.53	+0.4
9,461	+		RR42_RS00025	0.53	+0.4
9,508	+		RR42_RS00025	0.55	+0.5
9,508	+		RR42_RS00025	0.55	+1.4
9,508	+		RR42_RS00025	0.55	+0.2
9,509	-		RR42_RS00025	0.55	-0.1
9,509	-		RR42_RS00025	0.55	+1.6
9,509	-		RR42_RS00025	0.55	-0.1
9,519	-		RR42_RS00025	0.55	+0.7
9,541	-		RR42_RS00025	0.56	-0.6
9,554	+		RR42_RS00025	0.57	+1.5
9,591	-		RR42_RS00025	0.58	+1.0
9,602	+		RR42_RS00025	0.59	-0.3
9,699	+		RR42_RS00025	0.62	+0.4
9,700	-		RR42_RS00025	0.62	-0.5
9,700	-		RR42_RS00025	0.62	-1.2
9,717	-		RR42_RS00025	0.63	+1.0
9,720	+		RR42_RS00025	0.63	-0.5
9,720	+		RR42_RS00025	0.63	-0.6
9,720	+		RR42_RS00025	0.63	+0.0
9,735	-		RR42_RS00025	0.63	+0.3
9,783	-		RR42_RS00025	0.65	-1.4
9,863	+		RR42_RS00025	0.68	+0.1
9,863	+		RR42_RS00025	0.68	+0.8
9,953	-		RR42_RS00025	0.71	-0.6
9,953	-		RR42_RS00025	0.71	-1.5
9,990	-		RR42_RS00025	0.73	+0.8
10,010	+		RR42_RS00025	0.73	+0.1
10,010	+		RR42_RS00025	0.73	+0.8
10,011	-		RR42_RS00025	0.73	-0.6
10,086	+		RR42_RS00025	0.76	+0.8
10,130	+		RR42_RS00025	0.78	-0.9
10,159	-		RR42_RS00025	0.79	-0.0
10,162	+		RR42_RS00025	0.79	+0.8
10,162	+		RR42_RS00025	0.79	-0.1
10,162	+		RR42_RS00025	0.79	-2.3
10,162	+		RR42_RS00025	0.79	+1.8
10,162	+		RR42_RS00025	0.79	-1.3
10,163	-		RR42_RS00025	0.79	+0.4
10,163	-		RR42_RS00025	0.79	-1.8
10,163	-		RR42_RS00025	0.79	+1.8
10,251	+		RR42_RS00025	0.82	+1.3
10,357	-		RR42_RS00025	0.86	-3.2
10,388	+		RR42_RS00025	0.87	+2.4
10,388	+		RR42_RS00025	0.87	-0.4
10,389	-		RR42_RS00025	0.87	-0.1
10,396	+		RR42_RS00025	0.87	+1.4
10,397	-		RR42_RS00025	0.87	-2.5
10,397	-		RR42_RS00025	0.87	-0.1
10,398	+		RR42_RS00025	0.88	-1.0
10,399	-		RR42_RS00025	0.88	-0.5
10,399	-		RR42_RS00025	0.88	+1.1
10,468	-				-0.6
10,504	-				-2.3
10,615	-				-1.5
10,615	-				+1.0
10,615	-				-0.6
10,615	-				+1.9
10,643	+				+0.0
10,644	-				+0.3
10,664	+				+1.7
10,664	+				+0.2
10,706	+				-0.0
10,707	-				-2.9
10,707	-				+0.1
10,750	-				-1.0
10,805	+				+0.9
10,814	+				+1.3
10,814	+				-0.2
10,836	+				+0.5
10,836	+				+0.6
10,965	+				+0.5
10,965	+				+0.4
10,965	+				+1.0
10,966	-				+0.4
10,966	-				+0.1
10,966	-				-1.2
10,966	-				+1.2
10,966	-				+0.4
10,966	-				-1.3
11,042	+		RR42_RS00030	0.13	+1.5
11,112	-		RR42_RS00030	0.16	-0.4
11,131	+		RR42_RS00030	0.17	+0.6
11,132	-		RR42_RS00030	0.17	+1.4
11,132	-		RR42_RS00030	0.17	-0.2
11,143	+		RR42_RS00030	0.17	+0.2
11,236	-		RR42_RS00030	0.21	+1.8
11,236	-		RR42_RS00030	0.21	-2.0
11,313	+		RR42_RS00030	0.25	-1.0
11,365	-		RR42_RS00030	0.27	+1.4
11,388	-		RR42_RS00030	0.28	-2.2
11,613	+		RR42_RS00030	0.38	-0.2
11,613	+		RR42_RS00030	0.38	-0.1
11,614	-		RR42_RS00030	0.38	-0.9
11,694	+		RR42_RS00030	0.42	+0.7
11,695	-		RR42_RS00030	0.42	-1.6