Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3461 and Pf6N2E2_6120 are separated by 154 nucleotides Pf6N2E2_6120 and Pf6N2E2_6121 are separated by 167 nucleotides Pf6N2E2_6121 and Pf6N2E2_6122 are separated by 244 nucleotides Pf6N2E2_6122 and Pf6N2E2_6123 are separated by 13 nucleotides Pf6N2E2_6123 and Pf6N2E2_6124 are separated by 122 nucleotides
Pf6N2E2_3461 - Exodeoxyribonuclease V gamma chain (EC 3.1.11.5), at 4,033,089 to 4,036,541
_3461
Pf6N2E2_6120 - 5S RNA, at 4,036,696 to 4,036,815
_6120
Pf6N2E2_6121 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 4,036,983 to 4,039,873
_6121
Pf6N2E2_6122 - tRNA-Ala-TGC, at 4,040,118 to 4,040,190
_6122
Pf6N2E2_6123 - tRNA-Ile-GAT, at 4,040,204 to 4,040,277
_6123
Pf6N2E2_6124 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 4,040,400 to 4,041,928
_6124
Position (kb)
4036
4037
4038
4039
4040 Strain fitness (log2 ratio)
-2
-1
0
1 at 4036.584 kb on - strand at 4036.584 kb on - strand at 4036.631 kb on + strand at 4036.631 kb on + strand at 4036.632 kb on - strand at 4037.132 kb on - strand at 4037.132 kb on - strand at 4037.132 kb on - strand at 4037.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 4,036,584 - +0.6 4,036,584 - -0.4 4,036,631 + -0.3 4,036,631 + -0.0 4,036,632 - -0.7 4,037,132 - -0.1 4,037,132 - -2.0 4,037,132 - -1.6 4,037,132 - -0.2
Or see this region's nucleotide sequence