Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_10

Experiment: L-Alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_9 and Pf6N2E2_10 are separated by 37 nucleotidesPf6N2E2_10 and Pf6N2E2_11 are separated by 353 nucleotidesPf6N2E2_11 and Pf6N2E2_12 are separated by 144 nucleotides Pf6N2E2_9 - Pyoverdine sidechain non-ribosomal peptide synthetase PvdD @ Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 34,541 to 38,686 _9 Pf6N2E2_10 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 38,724 to 40,382 _10 Pf6N2E2_11 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 40,736 to 40,888 _11 Pf6N2E2_12 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 41,033 to 41,908 _12 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -1 0 1 2at 37.733 kb on + strand, within Pf6N2E2_9at 37.919 kb on + strand, within Pf6N2E2_9at 37.919 kb on + strand, within Pf6N2E2_9at 37.920 kb on - strand, within Pf6N2E2_9at 37.934 kb on - strand, within Pf6N2E2_9at 37.934 kb on - strand, within Pf6N2E2_9at 38.049 kb on + strand, within Pf6N2E2_9at 38.049 kb on + strand, within Pf6N2E2_9at 38.073 kb on + strand, within Pf6N2E2_9at 38.073 kb on + strand, within Pf6N2E2_9at 38.074 kb on - strand, within Pf6N2E2_9at 38.082 kb on + strand, within Pf6N2E2_9at 38.083 kb on - strand, within Pf6N2E2_9at 38.527 kb on - strandat 38.585 kb on + strandat 38.672 kb on + strandat 38.673 kb on - strandat 38.804 kb on - strandat 38.870 kb on + strandat 38.872 kb on + strandat 38.872 kb on + strandat 38.873 kb on - strandat 39.113 kb on - strand, within Pf6N2E2_10at 39.115 kb on + strand, within Pf6N2E2_10at 39.215 kb on - strand, within Pf6N2E2_10at 39.538 kb on + strand, within Pf6N2E2_10at 39.538 kb on + strand, within Pf6N2E2_10at 39.538 kb on + strand, within Pf6N2E2_10at 39.701 kb on - strand, within Pf6N2E2_10at 39.794 kb on - strand, within Pf6N2E2_10at 39.865 kb on + strand, within Pf6N2E2_10at 39.865 kb on + strand, within Pf6N2E2_10at 39.866 kb on - strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.106 kb on + strand, within Pf6N2E2_10at 40.311 kb on + strandat 40.311 kb on + strandat 40.312 kb on - strandat 40.481 kb on + strandat 40.481 kb on + strandat 40.532 kb on + strandat 40.532 kb on + strandat 40.533 kb on - strandat 40.575 kb on - strandat 40.575 kb on - strandat 40.575 kb on - strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.737 kb on + strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.738 kb on - strandat 40.742 kb on - strandat 40.742 kb on - strandat 40.911 kb on + strandat 40.912 kb on - strandat 40.912 kb on - strandat 40.912 kb on - strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.034 kb on + strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.035 kb on - strandat 41.038 kb on + strandat 41.208 kb on + strand, within Pf6N2E2_12at 41.209 kb on - strand, within Pf6N2E2_12at 41.209 kb on - strand, within Pf6N2E2_12at 41.221 kb on - strand, within Pf6N2E2_12at 41.221 kb on - strand, within Pf6N2E2_12at 41.241 kb on + strand, within Pf6N2E2_12at 41.262 kb on + strand, within Pf6N2E2_12at 41.331 kb on + strand, within Pf6N2E2_12at 41.359 kb on - strand, within Pf6N2E2_12

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
remove
37,733 + Pf6N2E2_9 0.77 +0.5
37,919 + Pf6N2E2_9 0.81 +0.3
37,919 + Pf6N2E2_9 0.81 -0.3
37,920 - Pf6N2E2_9 0.82 -1.1
37,934 - Pf6N2E2_9 0.82 +0.1
37,934 - Pf6N2E2_9 0.82 -0.6
38,049 + Pf6N2E2_9 0.85 +0.9
38,049 + Pf6N2E2_9 0.85 -0.5
38,073 + Pf6N2E2_9 0.85 +0.7
38,073 + Pf6N2E2_9 0.85 -1.2
38,074 - Pf6N2E2_9 0.85 +0.5
38,082 + Pf6N2E2_9 0.85 +0.8
38,083 - Pf6N2E2_9 0.85 +0.4
38,527 - -0.8
38,585 + +0.3
38,672 + +2.4
38,673 - +0.9
38,804 - +0.1
38,870 + +1.0
38,872 + +0.8
38,872 + -0.0
38,873 - +0.8
39,113 - Pf6N2E2_10 0.23 +0.6
39,115 + Pf6N2E2_10 0.24 +0.5
39,215 - Pf6N2E2_10 0.30 +0.5
39,538 + Pf6N2E2_10 0.49 +0.6
39,538 + Pf6N2E2_10 0.49 +0.6
39,538 + Pf6N2E2_10 0.49 +0.5
39,701 - Pf6N2E2_10 0.59 +0.2
39,794 - Pf6N2E2_10 0.64 +0.6
39,865 + Pf6N2E2_10 0.69 +1.2
39,865 + Pf6N2E2_10 0.69 -0.5
39,866 - Pf6N2E2_10 0.69 +1.1
40,106 + Pf6N2E2_10 0.83 +0.4
40,106 + Pf6N2E2_10 0.83 +0.9
40,106 + Pf6N2E2_10 0.83 +0.6
40,106 + Pf6N2E2_10 0.83 +1.1
40,106 + Pf6N2E2_10 0.83 +0.6
40,311 + -0.2
40,311 + +0.1
40,312 - +0.6
40,481 + -1.2
40,481 + +0.4
40,532 + +0.6
40,532 + -0.0
40,533 - +1.0
40,575 - -0.6
40,575 - -0.9
40,575 - +0.4
40,737 + -0.3
40,737 + +1.9
40,737 + -0.5
40,737 + -0.4
40,737 + -0.2
40,737 + +0.8
40,738 - +0.2
40,738 - -1.0
40,738 - +2.1
40,738 - -0.7
40,738 - +0.7
40,738 - -0.2
40,738 - +0.3
40,738 - -1.5
40,742 - -0.6
40,742 - +0.5
40,911 + +0.1
40,912 - +0.5
40,912 - -1.1
40,912 - +0.2
41,034 + +0.1
41,034 + -0.9
41,034 + +0.1
41,034 + +0.6
41,034 + +0.7
41,035 - +0.4
41,035 - -0.5
41,035 - -1.6
41,035 - +0.4
41,035 - +0.6
41,035 - +0.6
41,035 - +0.4
41,035 - -0.1
41,035 - +0.1
41,035 - +0.9
41,035 - +0.3
41,038 + +0.8
41,208 + Pf6N2E2_12 0.20 -0.0
41,209 - Pf6N2E2_12 0.20 -0.7
41,209 - Pf6N2E2_12 0.20 -0.1
41,221 - Pf6N2E2_12 0.21 -0.6
41,221 - Pf6N2E2_12 0.21 -0.1
41,241 + Pf6N2E2_12 0.24 +0.8
41,262 + Pf6N2E2_12 0.26 +0.5
41,331 + Pf6N2E2_12 0.34 +0.0
41,359 - Pf6N2E2_12 0.37 +1.5

Or see this region's nucleotide sequence