Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5977 and Pf1N1B4_5978 are separated by 212 nucleotides Pf1N1B4_5978 and Pf1N1B4_5979 are separated by 120 nucleotides
Pf1N1B4_5977 - Transporter, MFS superfamily, at 424,806 to 426,203
_5977
Pf1N1B4_5978 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 426,416 to 427,996
_5978
Pf1N1B4_5979 - Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-), at 428,117 to 429,124
_5979
Position (kb) 426
427
428 Strain fitness (log2 ratio) -2
-1
0
1
2 at 425.598 kb on + strand, within Pf1N1B4_5977 at 425.599 kb on - strand at 425.599 kb on - strand, within Pf1N1B4_5977 at 425.625 kb on + strand, within Pf1N1B4_5977 at 425.721 kb on + strand, within Pf1N1B4_5977 at 425.877 kb on + strand, within Pf1N1B4_5977 at 425.877 kb on + strand, within Pf1N1B4_5977 at 425.877 kb on + strand, within Pf1N1B4_5977 at 425.877 kb on + strand, within Pf1N1B4_5977 at 425.878 kb on - strand at 425.878 kb on - strand, within Pf1N1B4_5977 at 426.015 kb on + strand, within Pf1N1B4_5977 at 426.016 kb on - strand, within Pf1N1B4_5977 at 426.210 kb on + strand at 426.210 kb on + strand at 426.210 kb on + strand at 426.210 kb on + strand at 426.210 kb on + strand at 426.276 kb on + strand at 426.385 kb on + strand at 426.385 kb on + strand at 426.440 kb on + strand at 426.733 kb on + strand, within Pf1N1B4_5978 at 426.786 kb on - strand at 426.786 kb on - strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.071 kb on - strand, within Pf1N1B4_5978 at 427.071 kb on - strand, within Pf1N1B4_5978 at 427.141 kb on - strand, within Pf1N1B4_5978 at 427.442 kb on + strand, within Pf1N1B4_5978 at 427.483 kb on - strand, within Pf1N1B4_5978 at 428.145 kb on + strand at 428.146 kb on - strand at 428.146 kb on - strand at 428.361 kb on + strand, within Pf1N1B4_5979 at 428.362 kb on - strand, within Pf1N1B4_5979 at 428.362 kb on - strand, within Pf1N1B4_5979 at 428.711 kb on - strand, within Pf1N1B4_5979 at 428.711 kb on - strand, within Pf1N1B4_5979
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 425,598 + Pf1N1B4_5977 0.57 -0.3 425,599 - +0.2 425,599 - Pf1N1B4_5977 0.57 -0.8 425,625 + Pf1N1B4_5977 0.59 +0.2 425,721 + Pf1N1B4_5977 0.65 -0.1 425,877 + Pf1N1B4_5977 0.77 -0.2 425,877 + Pf1N1B4_5977 0.77 +1.4 425,877 + Pf1N1B4_5977 0.77 +1.5 425,877 + Pf1N1B4_5977 0.77 +0.4 425,878 - +0.8 425,878 - Pf1N1B4_5977 0.77 -0.2 426,015 + Pf1N1B4_5977 0.86 -1.5 426,016 - Pf1N1B4_5977 0.87 +1.4 426,210 + +1.4 426,210 + -0.7 426,210 + -0.3 426,210 + -0.2 426,210 + +0.8 426,276 + +0.1 426,385 + -0.9 426,385 + -0.2 426,440 + +0.5 426,733 + Pf1N1B4_5978 0.20 -0.9 426,786 - +1.8 426,786 - Pf1N1B4_5978 0.23 -2.6 427,070 + Pf1N1B4_5978 0.41 +0.5 427,070 + Pf1N1B4_5978 0.41 -0.5 427,070 + Pf1N1B4_5978 0.41 +0.2 427,070 + Pf1N1B4_5978 0.41 -1.8 427,070 + Pf1N1B4_5978 0.41 +0.2 427,071 - Pf1N1B4_5978 0.41 -1.0 427,071 - Pf1N1B4_5978 0.41 +0.8 427,141 - Pf1N1B4_5978 0.46 -0.6 427,442 + Pf1N1B4_5978 0.65 -0.3 427,483 - Pf1N1B4_5978 0.67 -0.8 428,145 + +0.1 428,146 - -0.2 428,146 - -0.5 428,361 + Pf1N1B4_5979 0.24 -0.8 428,362 - Pf1N1B4_5979 0.24 +0.4 428,362 - Pf1N1B4_5979 0.24 -0.4 428,711 - Pf1N1B4_5979 0.59 -0.6 428,711 - Pf1N1B4_5979 0.59 -0.4
Or see this region's nucleotide sequence