Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5129

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5128 and Pf1N1B4_5129 are separated by 408 nucleotidesPf1N1B4_5129 and Pf1N1B4_5130 are separated by 531 nucleotides Pf1N1B4_5128 - ABC-type protease/lipase transport system, ATPase and permease components, at 5,705,253 to 5,706,014 _5128 Pf1N1B4_5129 - D-galacturonate transporter ExuT (from data), at 5,706,423 to 5,707,826 _5129 Pf1N1B4_5130 - FIG01220323: hypothetical protein, at 5,708,358 to 5,709,413 _5130 Position (kb) 5706 5707 5708Strain fitness (log2 ratio) -2 -1 0 1 2at 5705.432 kb on - strand, within Pf1N1B4_5128at 5705.432 kb on - strand, within Pf1N1B4_5128at 5705.581 kb on + strand, within Pf1N1B4_5128at 5705.581 kb on + strand, within Pf1N1B4_5128at 5705.581 kb on + strand, within Pf1N1B4_5128at 5705.582 kb on - strand, within Pf1N1B4_5128at 5705.582 kb on - strandat 5705.586 kb on - strand, within Pf1N1B4_5128at 5705.723 kb on - strand, within Pf1N1B4_5128at 5705.757 kb on - strand, within Pf1N1B4_5128at 5705.882 kb on - strand, within Pf1N1B4_5128at 5705.894 kb on + strand, within Pf1N1B4_5128at 5705.894 kb on + strand, within Pf1N1B4_5128at 5705.895 kb on - strandat 5705.896 kb on + strand, within Pf1N1B4_5128at 5705.896 kb on + strand, within Pf1N1B4_5128at 5705.896 kb on + strand, within Pf1N1B4_5128at 5705.896 kb on + strand, within Pf1N1B4_5128at 5705.896 kb on + strandat 5705.897 kb on - strand, within Pf1N1B4_5128at 5705.897 kb on - strand, within Pf1N1B4_5128at 5705.897 kb on - strand, within Pf1N1B4_5128at 5705.897 kb on - strand, within Pf1N1B4_5128at 5705.897 kb on - strand, within Pf1N1B4_5128at 5705.897 kb on - strand, within Pf1N1B4_5128at 5705.954 kb on + strandat 5706.051 kb on + strandat 5706.052 kb on - strandat 5706.158 kb on + strandat 5706.158 kb on + strandat 5706.158 kb on + strandat 5706.158 kb on + strandat 5706.159 kb on - strandat 5706.159 kb on - strandat 5706.327 kb on + strandat 5706.327 kb on + strandat 5706.327 kb on + strandat 5706.328 kb on - strandat 5706.328 kb on - strandat 5706.328 kb on - strandat 5706.328 kb on - strandat 5706.425 kb on - strandat 5706.454 kb on - strandat 5706.521 kb on - strandat 5706.521 kb on - strandat 5706.521 kb on - strandat 5706.749 kb on - strand, within Pf1N1B4_5129at 5706.749 kb on - strand, within Pf1N1B4_5129at 5706.850 kb on + strand, within Pf1N1B4_5129at 5706.898 kb on + strandat 5706.958 kb on + strand, within Pf1N1B4_5129at 5706.959 kb on - strand, within Pf1N1B4_5129at 5706.959 kb on - strand, within Pf1N1B4_5129at 5706.959 kb on - strand, within Pf1N1B4_5129at 5706.959 kb on - strand, within Pf1N1B4_5129at 5707.177 kb on + strand, within Pf1N1B4_5129at 5707.178 kb on - strand, within Pf1N1B4_5129at 5707.217 kb on + strand, within Pf1N1B4_5129at 5707.354 kb on + strandat 5707.354 kb on + strand, within Pf1N1B4_5129at 5707.354 kb on + strand, within Pf1N1B4_5129at 5707.355 kb on - strand, within Pf1N1B4_5129at 5707.355 kb on - strandat 5707.554 kb on + strand, within Pf1N1B4_5129at 5707.555 kb on - strand, within Pf1N1B4_5129at 5707.555 kb on - strandat 5707.555 kb on - strand, within Pf1N1B4_5129at 5707.555 kb on - strand, within Pf1N1B4_5129at 5707.684 kb on - strand, within Pf1N1B4_5129at 5707.723 kb on + strandat 5707.772 kb on - strandat 5707.837 kb on + strandat 5707.837 kb on + strandat 5707.837 kb on + strandat 5707.838 kb on - strandat 5707.849 kb on - strandat 5707.870 kb on + strandat 5707.889 kb on + strandat 5708.035 kb on + strandat 5708.036 kb on - strandat 5708.105 kb on + strandat 5708.232 kb on - strandat 5708.244 kb on - strandat 5708.244 kb on - strandat 5708.411 kb on - strandat 5708.512 kb on + strand, within Pf1N1B4_5130at 5708.513 kb on - strand, within Pf1N1B4_5130at 5708.513 kb on - strand, within Pf1N1B4_5130at 5708.513 kb on - strand, within Pf1N1B4_5130at 5708.605 kb on - strand, within Pf1N1B4_5130at 5708.605 kb on - strand, within Pf1N1B4_5130at 5708.621 kb on - strand, within Pf1N1B4_5130at 5708.621 kb on - strand, within Pf1N1B4_5130at 5708.737 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,705,432 - Pf1N1B4_5128 0.23 +0.5
5,705,432 - Pf1N1B4_5128 0.23 -0.4
5,705,581 + Pf1N1B4_5128 0.43 -0.6
5,705,581 + Pf1N1B4_5128 0.43 -0.4
5,705,581 + Pf1N1B4_5128 0.43 -0.7
5,705,582 - Pf1N1B4_5128 0.43 -1.6
5,705,582 - +0.0
5,705,586 - Pf1N1B4_5128 0.44 -0.8
5,705,723 - Pf1N1B4_5128 0.62 -0.4
5,705,757 - Pf1N1B4_5128 0.66 +2.4
5,705,882 - Pf1N1B4_5128 0.83 +1.4
5,705,894 + Pf1N1B4_5128 0.84 -0.4
5,705,894 + Pf1N1B4_5128 0.84 +0.3
5,705,895 - +2.2
5,705,896 + Pf1N1B4_5128 0.84 -0.7
5,705,896 + Pf1N1B4_5128 0.84 +0.2
5,705,896 + Pf1N1B4_5128 0.84 -0.8
5,705,896 + Pf1N1B4_5128 0.84 +0.0
5,705,896 + +0.2
5,705,897 - Pf1N1B4_5128 0.85 -0.6
5,705,897 - Pf1N1B4_5128 0.85 -0.4
5,705,897 - Pf1N1B4_5128 0.85 -2.4
5,705,897 - Pf1N1B4_5128 0.85 +0.6
5,705,897 - Pf1N1B4_5128 0.85 -0.2
5,705,897 - Pf1N1B4_5128 0.85 +0.3
5,705,954 + +0.0
5,706,051 + +1.1
5,706,052 - +1.2
5,706,158 + -1.4
5,706,158 + -0.1
5,706,158 + -0.7
5,706,158 + -1.4
5,706,159 - +0.4
5,706,159 - -1.0
5,706,327 + -0.0
5,706,327 + -0.9
5,706,327 + +0.0
5,706,328 - +0.6
5,706,328 - -0.5
5,706,328 - -0.7
5,706,328 - -0.7
5,706,425 - +1.5
5,706,454 - -1.0
5,706,521 - -0.1
5,706,521 - -0.2
5,706,521 - +0.8
5,706,749 - Pf1N1B4_5129 0.23 -0.1
5,706,749 - Pf1N1B4_5129 0.23 +0.2
5,706,850 + Pf1N1B4_5129 0.30 -0.5
5,706,898 + +0.0
5,706,958 + Pf1N1B4_5129 0.38 +0.6
5,706,959 - Pf1N1B4_5129 0.38 -0.8
5,706,959 - Pf1N1B4_5129 0.38 -0.1
5,706,959 - Pf1N1B4_5129 0.38 -1.6
5,706,959 - Pf1N1B4_5129 0.38 -0.3
5,707,177 + Pf1N1B4_5129 0.54 -0.3
5,707,178 - Pf1N1B4_5129 0.54 -0.4
5,707,217 + Pf1N1B4_5129 0.57 -1.0
5,707,354 + -0.4
5,707,354 + Pf1N1B4_5129 0.66 +0.9
5,707,354 + Pf1N1B4_5129 0.66 +0.6
5,707,355 - Pf1N1B4_5129 0.66 -0.5
5,707,355 - +0.2
5,707,554 + Pf1N1B4_5129 0.81 +2.4
5,707,555 - Pf1N1B4_5129 0.81 +1.2
5,707,555 - +1.2
5,707,555 - Pf1N1B4_5129 0.81 +0.0
5,707,555 - Pf1N1B4_5129 0.81 -0.9
5,707,684 - Pf1N1B4_5129 0.90 -1.0
5,707,723 + +1.0
5,707,772 - -0.8
5,707,837 + -0.2
5,707,837 + +0.6
5,707,837 + +0.7
5,707,838 - -1.1
5,707,849 - +0.0
5,707,870 + -1.0
5,707,889 + -1.1
5,708,035 + +0.6
5,708,036 - -0.4
5,708,105 + -1.1
5,708,232 - -0.5
5,708,244 - +0.6
5,708,244 - +1.2
5,708,411 - -0.3
5,708,512 + Pf1N1B4_5130 0.15 +0.3
5,708,513 - Pf1N1B4_5130 0.15 +0.9
5,708,513 - Pf1N1B4_5130 0.15 -0.6
5,708,513 - Pf1N1B4_5130 0.15 +0.2
5,708,605 - Pf1N1B4_5130 0.23 +0.4
5,708,605 - Pf1N1B4_5130 0.23 +0.6
5,708,621 - Pf1N1B4_5130 0.25 +0.2
5,708,621 - Pf1N1B4_5130 0.25 +1.6
5,708,737 + +0.6

Or see this region's nucleotide sequence