Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5128 and Pf1N1B4_5129 are separated by 408 nucleotides Pf1N1B4_5129 and Pf1N1B4_5130 are separated by 531 nucleotides
Pf1N1B4_5128 - ABC-type protease/lipase transport system, ATPase and permease components, at 5,705,253 to 5,706,014
_5128
Pf1N1B4_5129 - D-galacturonate transporter ExuT (from data) , at 5,706,423 to 5,707,826
_5129
Pf1N1B4_5130 - FIG01220323: hypothetical protein, at 5,708,358 to 5,709,413
_5130
Position (kb)
5706
5707
5708 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5705.432 kb on - strand, within Pf1N1B4_5128 at 5705.432 kb on - strand, within Pf1N1B4_5128 at 5705.581 kb on + strand, within Pf1N1B4_5128 at 5705.581 kb on + strand, within Pf1N1B4_5128 at 5705.581 kb on + strand, within Pf1N1B4_5128 at 5705.582 kb on - strand, within Pf1N1B4_5128 at 5705.582 kb on - strand at 5705.586 kb on - strand, within Pf1N1B4_5128 at 5705.723 kb on - strand, within Pf1N1B4_5128 at 5705.757 kb on - strand, within Pf1N1B4_5128 at 5705.882 kb on - strand, within Pf1N1B4_5128 at 5705.894 kb on + strand, within Pf1N1B4_5128 at 5705.894 kb on + strand, within Pf1N1B4_5128 at 5705.895 kb on - strand at 5705.896 kb on + strand, within Pf1N1B4_5128 at 5705.896 kb on + strand, within Pf1N1B4_5128 at 5705.896 kb on + strand, within Pf1N1B4_5128 at 5705.896 kb on + strand, within Pf1N1B4_5128 at 5705.896 kb on + strand at 5705.897 kb on - strand, within Pf1N1B4_5128 at 5705.897 kb on - strand, within Pf1N1B4_5128 at 5705.897 kb on - strand, within Pf1N1B4_5128 at 5705.897 kb on - strand, within Pf1N1B4_5128 at 5705.897 kb on - strand, within Pf1N1B4_5128 at 5705.897 kb on - strand, within Pf1N1B4_5128 at 5705.954 kb on + strand at 5706.051 kb on + strand at 5706.052 kb on - strand at 5706.158 kb on + strand at 5706.158 kb on + strand at 5706.158 kb on + strand at 5706.158 kb on + strand at 5706.159 kb on - strand at 5706.159 kb on - strand at 5706.327 kb on + strand at 5706.327 kb on + strand at 5706.327 kb on + strand at 5706.328 kb on - strand at 5706.328 kb on - strand at 5706.328 kb on - strand at 5706.328 kb on - strand at 5706.425 kb on - strand at 5706.454 kb on - strand at 5706.521 kb on - strand at 5706.521 kb on - strand at 5706.521 kb on - strand at 5706.749 kb on - strand, within Pf1N1B4_5129 at 5706.749 kb on - strand, within Pf1N1B4_5129 at 5706.850 kb on + strand, within Pf1N1B4_5129 at 5706.898 kb on + strand at 5706.958 kb on + strand, within Pf1N1B4_5129 at 5706.959 kb on - strand, within Pf1N1B4_5129 at 5706.959 kb on - strand, within Pf1N1B4_5129 at 5706.959 kb on - strand, within Pf1N1B4_5129 at 5706.959 kb on - strand, within Pf1N1B4_5129 at 5707.177 kb on + strand, within Pf1N1B4_5129 at 5707.178 kb on - strand, within Pf1N1B4_5129 at 5707.217 kb on + strand, within Pf1N1B4_5129 at 5707.354 kb on + strand at 5707.354 kb on + strand, within Pf1N1B4_5129 at 5707.354 kb on + strand, within Pf1N1B4_5129 at 5707.355 kb on - strand, within Pf1N1B4_5129 at 5707.355 kb on - strand at 5707.554 kb on + strand, within Pf1N1B4_5129 at 5707.555 kb on - strand, within Pf1N1B4_5129 at 5707.555 kb on - strand at 5707.555 kb on - strand, within Pf1N1B4_5129 at 5707.555 kb on - strand, within Pf1N1B4_5129 at 5707.684 kb on - strand, within Pf1N1B4_5129 at 5707.723 kb on + strand at 5707.772 kb on - strand at 5707.837 kb on + strand at 5707.837 kb on + strand at 5707.837 kb on + strand at 5707.838 kb on - strand at 5707.849 kb on - strand at 5707.870 kb on + strand at 5707.889 kb on + strand at 5708.035 kb on + strand at 5708.036 kb on - strand at 5708.105 kb on + strand at 5708.232 kb on - strand at 5708.244 kb on - strand at 5708.244 kb on - strand at 5708.411 kb on - strand at 5708.512 kb on + strand, within Pf1N1B4_5130 at 5708.513 kb on - strand, within Pf1N1B4_5130 at 5708.513 kb on - strand, within Pf1N1B4_5130 at 5708.513 kb on - strand, within Pf1N1B4_5130 at 5708.605 kb on - strand, within Pf1N1B4_5130 at 5708.605 kb on - strand, within Pf1N1B4_5130 at 5708.621 kb on - strand, within Pf1N1B4_5130 at 5708.621 kb on - strand, within Pf1N1B4_5130 at 5708.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 5,705,432 - Pf1N1B4_5128 0.23 +0.5 5,705,432 - Pf1N1B4_5128 0.23 -0.4 5,705,581 + Pf1N1B4_5128 0.43 -0.6 5,705,581 + Pf1N1B4_5128 0.43 -0.4 5,705,581 + Pf1N1B4_5128 0.43 -0.7 5,705,582 - Pf1N1B4_5128 0.43 -1.6 5,705,582 - +0.0 5,705,586 - Pf1N1B4_5128 0.44 -0.8 5,705,723 - Pf1N1B4_5128 0.62 -0.4 5,705,757 - Pf1N1B4_5128 0.66 +2.4 5,705,882 - Pf1N1B4_5128 0.83 +1.4 5,705,894 + Pf1N1B4_5128 0.84 -0.4 5,705,894 + Pf1N1B4_5128 0.84 +0.3 5,705,895 - +2.2 5,705,896 + Pf1N1B4_5128 0.84 -0.7 5,705,896 + Pf1N1B4_5128 0.84 +0.2 5,705,896 + Pf1N1B4_5128 0.84 -0.8 5,705,896 + Pf1N1B4_5128 0.84 +0.0 5,705,896 + +0.2 5,705,897 - Pf1N1B4_5128 0.85 -0.6 5,705,897 - Pf1N1B4_5128 0.85 -0.4 5,705,897 - Pf1N1B4_5128 0.85 -2.4 5,705,897 - Pf1N1B4_5128 0.85 +0.6 5,705,897 - Pf1N1B4_5128 0.85 -0.2 5,705,897 - Pf1N1B4_5128 0.85 +0.3 5,705,954 + +0.0 5,706,051 + +1.1 5,706,052 - +1.2 5,706,158 + -1.4 5,706,158 + -0.1 5,706,158 + -0.7 5,706,158 + -1.4 5,706,159 - +0.4 5,706,159 - -1.0 5,706,327 + -0.0 5,706,327 + -0.9 5,706,327 + +0.0 5,706,328 - +0.6 5,706,328 - -0.5 5,706,328 - -0.7 5,706,328 - -0.7 5,706,425 - +1.5 5,706,454 - -1.0 5,706,521 - -0.1 5,706,521 - -0.2 5,706,521 - +0.8 5,706,749 - Pf1N1B4_5129 0.23 -0.1 5,706,749 - Pf1N1B4_5129 0.23 +0.2 5,706,850 + Pf1N1B4_5129 0.30 -0.5 5,706,898 + +0.0 5,706,958 + Pf1N1B4_5129 0.38 +0.6 5,706,959 - Pf1N1B4_5129 0.38 -0.8 5,706,959 - Pf1N1B4_5129 0.38 -0.1 5,706,959 - Pf1N1B4_5129 0.38 -1.6 5,706,959 - Pf1N1B4_5129 0.38 -0.3 5,707,177 + Pf1N1B4_5129 0.54 -0.3 5,707,178 - Pf1N1B4_5129 0.54 -0.4 5,707,217 + Pf1N1B4_5129 0.57 -1.0 5,707,354 + -0.4 5,707,354 + Pf1N1B4_5129 0.66 +0.9 5,707,354 + Pf1N1B4_5129 0.66 +0.6 5,707,355 - Pf1N1B4_5129 0.66 -0.5 5,707,355 - +0.2 5,707,554 + Pf1N1B4_5129 0.81 +2.4 5,707,555 - Pf1N1B4_5129 0.81 +1.2 5,707,555 - +1.2 5,707,555 - Pf1N1B4_5129 0.81 +0.0 5,707,555 - Pf1N1B4_5129 0.81 -0.9 5,707,684 - Pf1N1B4_5129 0.90 -1.0 5,707,723 + +1.0 5,707,772 - -0.8 5,707,837 + -0.2 5,707,837 + +0.6 5,707,837 + +0.7 5,707,838 - -1.1 5,707,849 - +0.0 5,707,870 + -1.0 5,707,889 + -1.1 5,708,035 + +0.6 5,708,036 - -0.4 5,708,105 + -1.1 5,708,232 - -0.5 5,708,244 - +0.6 5,708,244 - +1.2 5,708,411 - -0.3 5,708,512 + Pf1N1B4_5130 0.15 +0.3 5,708,513 - Pf1N1B4_5130 0.15 +0.9 5,708,513 - Pf1N1B4_5130 0.15 -0.6 5,708,513 - Pf1N1B4_5130 0.15 +0.2 5,708,605 - Pf1N1B4_5130 0.23 +0.4 5,708,605 - Pf1N1B4_5130 0.23 +0.6 5,708,621 - Pf1N1B4_5130 0.25 +0.2 5,708,621 - Pf1N1B4_5130 0.25 +1.6 5,708,737 + +0.6
Or see this region's nucleotide sequence