Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_413

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_412 and Pf1N1B4_413 are separated by 270 nucleotidesPf1N1B4_413 and Pf1N1B4_414 are separated by 60 nucleotides Pf1N1B4_412 - L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data), at 481,540 to 482,358 _412 Pf1N1B4_413 - L-arabinolactonase (EC 3.1.1.15) (from data), at 482,629 to 483,573 _413 Pf1N1B4_414 - transcriptional regulator, at 483,634 to 484,350 _414 Position (kb) 482 483 484Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 481.796 kb on + strand, within Pf1N1B4_412at 481.796 kb on + strand, within Pf1N1B4_412at 482.087 kb on - strand, within Pf1N1B4_412at 482.123 kb on - strand, within Pf1N1B4_412at 482.505 kb on - strandat 482.538 kb on - strandat 482.538 kb on - strandat 482.570 kb on + strandat 482.572 kb on + strandat 482.573 kb on - strandat 482.600 kb on + strandat 482.600 kb on + strandat 482.601 kb on - strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.668 kb on + strandat 482.669 kb on - strandat 482.669 kb on - strandat 482.732 kb on + strand, within Pf1N1B4_413at 482.732 kb on + strand, within Pf1N1B4_413at 482.732 kb on + strand, within Pf1N1B4_413at 482.732 kb on + strand, within Pf1N1B4_413at 482.733 kb on - strand, within Pf1N1B4_413at 482.810 kb on + strand, within Pf1N1B4_413at 482.811 kb on - strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strand, within Pf1N1B4_413at 482.863 kb on + strandat 482.863 kb on + strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.864 kb on - strand, within Pf1N1B4_413at 482.867 kb on + strand, within Pf1N1B4_413at 482.867 kb on + strand, within Pf1N1B4_413at 482.867 kb on + strand, within Pf1N1B4_413at 482.867 kb on + strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.868 kb on - strand, within Pf1N1B4_413at 482.930 kb on + strand, within Pf1N1B4_413at 482.930 kb on + strand, within Pf1N1B4_413at 482.930 kb on + strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 482.931 kb on - strand, within Pf1N1B4_413at 483.002 kb on + strand, within Pf1N1B4_413at 483.003 kb on - strand, within Pf1N1B4_413at 483.049 kb on + strand, within Pf1N1B4_413at 483.049 kb on + strand, within Pf1N1B4_413at 483.050 kb on - strand, within Pf1N1B4_413at 483.058 kb on + strand, within Pf1N1B4_413at 483.058 kb on + strand, within Pf1N1B4_413at 483.059 kb on - strand, within Pf1N1B4_413at 483.059 kb on - strand, within Pf1N1B4_413at 483.059 kb on - strand, within Pf1N1B4_413at 483.061 kb on + strand, within Pf1N1B4_413at 483.124 kb on + strand, within Pf1N1B4_413at 483.418 kb on + strand, within Pf1N1B4_413at 483.418 kb on + strand, within Pf1N1B4_413at 483.419 kb on - strand, within Pf1N1B4_413at 483.419 kb on - strandat 483.519 kb on + strandat 483.520 kb on - strandat 483.528 kb on + strandat 483.529 kb on - strandat 483.529 kb on - strandat 483.529 kb on - strandat 483.635 kb on + strandat 483.636 kb on - strandat 483.926 kb on + strand, within Pf1N1B4_414at 483.965 kb on + strand, within Pf1N1B4_414at 483.965 kb on + strand, within Pf1N1B4_414at 483.966 kb on - strand, within Pf1N1B4_414at 483.966 kb on - strandat 483.966 kb on - strandat 483.966 kb on - strand, within Pf1N1B4_414at 484.148 kb on - strand, within Pf1N1B4_414at 484.523 kb on - strandat 484.523 kb on - strandat 484.527 kb on + strandat 484.527 kb on + strandat 484.527 kb on + strandat 484.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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481,796 + Pf1N1B4_412 0.31 -2.6
481,796 + Pf1N1B4_412 0.31 -2.6
482,087 - Pf1N1B4_412 0.67 -3.8
482,123 - Pf1N1B4_412 0.71 -1.7
482,505 - -1.9
482,538 - -0.9
482,538 - -1.9
482,570 + +0.1
482,572 + -1.7
482,573 - -1.4
482,600 + -2.4
482,600 + +0.1
482,601 - -1.7
482,668 + -0.5
482,668 + -0.5
482,668 + -3.2
482,668 + -2.1
482,668 + -0.7
482,668 + +0.1
482,668 + -1.2
482,669 - -2.4
482,669 - -2.1
482,732 + Pf1N1B4_413 0.11 -3.0
482,732 + Pf1N1B4_413 0.11 -0.7
482,732 + Pf1N1B4_413 0.11 -2.1
482,732 + Pf1N1B4_413 0.11 -2.4
482,733 - Pf1N1B4_413 0.11 +0.1
482,810 + Pf1N1B4_413 0.19 +1.1
482,811 - Pf1N1B4_413 0.19 -2.7
482,863 + Pf1N1B4_413 0.25 -3.2
482,863 + Pf1N1B4_413 0.25 -3.9
482,863 + Pf1N1B4_413 0.25 -1.7
482,863 + Pf1N1B4_413 0.25 -2.9
482,863 + Pf1N1B4_413 0.25 -0.5
482,863 + Pf1N1B4_413 0.25 -2.2
482,863 + -0.9
482,863 + Pf1N1B4_413 0.25 -2.9
482,864 - Pf1N1B4_413 0.25 -1.9
482,864 - Pf1N1B4_413 0.25 -1.7
482,864 - Pf1N1B4_413 0.25 -5.2
482,864 - Pf1N1B4_413 0.25 -1.9
482,864 - Pf1N1B4_413 0.25 -1.2
482,864 - Pf1N1B4_413 0.25 -0.9
482,864 - Pf1N1B4_413 0.25 -1.5
482,864 - Pf1N1B4_413 0.25 -1.2
482,864 - Pf1N1B4_413 0.25 -1.5
482,867 + Pf1N1B4_413 0.25 -3.6
482,867 + Pf1N1B4_413 0.25 -1.7
482,867 + Pf1N1B4_413 0.25 -2.4
482,867 + Pf1N1B4_413 0.25 -0.2
482,868 - Pf1N1B4_413 0.25 -0.5
482,868 - Pf1N1B4_413 0.25 -3.1
482,868 - Pf1N1B4_413 0.25 -2.2
482,868 - Pf1N1B4_413 0.25 -1.2
482,868 - Pf1N1B4_413 0.25 +1.1
482,868 - Pf1N1B4_413 0.25 -1.7
482,868 - Pf1N1B4_413 0.25 -0.9
482,930 + Pf1N1B4_413 0.32 -1.2
482,930 + Pf1N1B4_413 0.32 -1.7
482,930 + Pf1N1B4_413 0.32 -0.5
482,931 - Pf1N1B4_413 0.32 -2.6
482,931 - Pf1N1B4_413 0.32 -0.3
482,931 - Pf1N1B4_413 0.32 -4.5
482,931 - Pf1N1B4_413 0.32 -1.5
482,931 - Pf1N1B4_413 0.32 -3.2
482,931 - Pf1N1B4_413 0.32 -3.0
483,002 + Pf1N1B4_413 0.39 -2.4
483,003 - Pf1N1B4_413 0.40 -1.9
483,049 + Pf1N1B4_413 0.44 -0.9
483,049 + Pf1N1B4_413 0.44 -0.7
483,050 - Pf1N1B4_413 0.45 +0.5
483,058 + Pf1N1B4_413 0.45 -2.9
483,058 + Pf1N1B4_413 0.45 -2.7
483,059 - Pf1N1B4_413 0.46 -1.5
483,059 - Pf1N1B4_413 0.46 -0.5
483,059 - Pf1N1B4_413 0.46 +0.1
483,061 + Pf1N1B4_413 0.46 -1.2
483,124 + Pf1N1B4_413 0.52 -0.5
483,418 + Pf1N1B4_413 0.83 -3.2
483,418 + Pf1N1B4_413 0.83 -4.1
483,419 - Pf1N1B4_413 0.84 -1.5
483,419 - +1.1
483,519 + -2.5
483,520 - +1.1
483,528 + -1.1
483,529 - +1.7
483,529 - +0.9
483,529 - +2.4
483,635 + -1.6
483,636 - +0.4
483,926 + Pf1N1B4_414 0.41 +0.1
483,965 + Pf1N1B4_414 0.46 -4.5
483,965 + Pf1N1B4_414 0.46 -2.2
483,966 - Pf1N1B4_414 0.46 +1.1
483,966 - +2.1
483,966 - +1.1
483,966 - Pf1N1B4_414 0.46 +1.4
484,148 - Pf1N1B4_414 0.72 -0.5
484,523 - -0.5
484,523 - -1.0
484,527 + -0.1
484,527 + -1.5
484,527 + -0.1
484,528 - -1.2

Or see this region's nucleotide sequence