Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_410

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_409 and Pf1N1B4_410 are separated by 9 nucleotidesPf1N1B4_410 and Pf1N1B4_411 are separated by 66 nucleotides Pf1N1B4_409 - ABC transporter for D-galactose/L-arabinose, permease component (from data), at 477,824 to 478,792 _409 Pf1N1B4_410 - ABC transporter for D-galactose/L-arabinose, ATPase component (from data), at 478,802 to 480,346 _410 Pf1N1B4_411 - ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data), at 480,413 to 481,417 _411 Position (kb) 478 479 480 481Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 477.886 kb on - strandat 477.886 kb on - strandat 477.886 kb on - strandat 477.886 kb on - strandat 477.891 kb on + strandat 477.892 kb on - strandat 478.210 kb on - strand, within Pf1N1B4_409at 478.210 kb on - strand, within Pf1N1B4_409at 478.218 kb on + strand, within Pf1N1B4_409at 478.218 kb on + strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.356 kb on + strand, within Pf1N1B4_409at 478.357 kb on - strand, within Pf1N1B4_409at 478.587 kb on + strand, within Pf1N1B4_409at 478.587 kb on + strand, within Pf1N1B4_409at 478.587 kb on + strand, within Pf1N1B4_409at 478.587 kb on + strand, within Pf1N1B4_409at 478.588 kb on - strand, within Pf1N1B4_409at 478.619 kb on - strand, within Pf1N1B4_409at 478.677 kb on - strand, within Pf1N1B4_409at 478.792 kb on + strandat 478.792 kb on + strandat 478.792 kb on + strandat 478.792 kb on + strandat 478.792 kb on + strandat 478.793 kb on - strandat 478.793 kb on - strandat 478.793 kb on - strandat 478.930 kb on + strandat 478.931 kb on - strandat 478.993 kb on + strand, within Pf1N1B4_410at 478.994 kb on - strand, within Pf1N1B4_410at 479.008 kb on - strand, within Pf1N1B4_410at 479.027 kb on + strandat 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strandat 479.128 kb on - strandat 479.128 kb on - strand, within Pf1N1B4_410at 479.128 kb on - strand, within Pf1N1B4_410at 479.128 kb on - strand, within Pf1N1B4_410at 479.128 kb on - strandat 479.128 kb on - strand, within Pf1N1B4_410at 479.577 kb on + strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.616 kb on - strand, within Pf1N1B4_410at 479.616 kb on - strand, within Pf1N1B4_410at 479.693 kb on - strand, within Pf1N1B4_410at 479.730 kb on + strand, within Pf1N1B4_410at 479.730 kb on + strandat 479.731 kb on - strandat 479.731 kb on - strandat 479.938 kb on + strand, within Pf1N1B4_410at 480.154 kb on - strand, within Pf1N1B4_410at 480.332 kb on + strandat 480.332 kb on + strandat 480.333 kb on - strandat 480.346 kb on + strandat 480.347 kb on - strandat 480.347 kb on - strandat 480.347 kb on - strandat 480.473 kb on - strandat 480.493 kb on - strandat 480.493 kb on - strandat 480.493 kb on - strandat 480.493 kb on - strandat 480.493 kb on - strandat 480.528 kb on + strand, within Pf1N1B4_411at 480.528 kb on + strand, within Pf1N1B4_411at 480.528 kb on + strand, within Pf1N1B4_411at 480.528 kb on + strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.529 kb on - strand, within Pf1N1B4_411at 480.549 kb on + strand, within Pf1N1B4_411at 480.549 kb on + strand, within Pf1N1B4_411at 480.886 kb on + strand, within Pf1N1B4_411at 480.906 kb on + strand, within Pf1N1B4_411at 480.907 kb on - strand, within Pf1N1B4_411at 480.907 kb on - strand, within Pf1N1B4_411at 480.924 kb on + strand, within Pf1N1B4_411at 480.924 kb on + strand, within Pf1N1B4_411at 480.925 kb on - strandat 480.925 kb on - strand, within Pf1N1B4_411at 480.925 kb on - strand, within Pf1N1B4_411at 480.925 kb on - strand, within Pf1N1B4_411at 480.925 kb on - strand, within Pf1N1B4_411at 481.345 kb on + strandat 481.345 kb on + strandat 481.345 kb on + strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strandat 481.346 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
477,886 - -0.9
477,886 - -0.7
477,886 - -1.5
477,886 - -1.9
477,891 + -3.0
477,892 - -1.9
478,210 - Pf1N1B4_409 0.40 -0.6
478,210 - Pf1N1B4_409 0.40 -0.2
478,218 + Pf1N1B4_409 0.41 +0.1
478,218 + Pf1N1B4_409 0.41 -2.1
478,219 - Pf1N1B4_409 0.41 +0.1
478,219 - Pf1N1B4_409 0.41 -0.9
478,219 - Pf1N1B4_409 0.41 -1.2
478,219 - Pf1N1B4_409 0.41 -1.8
478,219 - Pf1N1B4_409 0.41 +0.1
478,219 - Pf1N1B4_409 0.41 -1.2
478,356 + Pf1N1B4_409 0.55 -1.1
478,357 - Pf1N1B4_409 0.55 -2.1
478,587 + Pf1N1B4_409 0.79 -0.9
478,587 + Pf1N1B4_409 0.79 -0.9
478,587 + Pf1N1B4_409 0.79 -0.9
478,587 + Pf1N1B4_409 0.79 -0.9
478,588 - Pf1N1B4_409 0.79 +0.7
478,619 - Pf1N1B4_409 0.82 -2.1
478,677 - Pf1N1B4_409 0.88 -2.2
478,792 + -2.2
478,792 + -2.6
478,792 + -0.9
478,792 + -2.1
478,792 + -2.6
478,793 - -0.5
478,793 - -2.4
478,793 - -1.4
478,930 + -1.8
478,931 - -0.5
478,993 + Pf1N1B4_410 0.12 -1.2
478,994 - Pf1N1B4_410 0.12 -1.2
479,008 - Pf1N1B4_410 0.13 -1.6
479,027 + +1.1
479,027 + Pf1N1B4_410 0.15 -0.5
479,027 + Pf1N1B4_410 0.15 +0.1
479,027 + Pf1N1B4_410 0.15 -1.5
479,027 + Pf1N1B4_410 0.15 -3.4
479,027 + Pf1N1B4_410 0.15 -1.9
479,027 + Pf1N1B4_410 0.15 -2.2
479,028 - Pf1N1B4_410 0.15 -1.9
479,028 - Pf1N1B4_410 0.15 -0.9
479,028 - Pf1N1B4_410 0.15 -1.6
479,028 - Pf1N1B4_410 0.15 -1.0
479,028 - Pf1N1B4_410 0.15 -1.2
479,028 - Pf1N1B4_410 0.15 -0.2
479,028 - Pf1N1B4_410 0.15 -2.8
479,028 - Pf1N1B4_410 0.15 -0.5
479,028 - Pf1N1B4_410 0.15 -0.5
479,127 + Pf1N1B4_410 0.21 -1.2
479,127 + Pf1N1B4_410 0.21 -2.2
479,127 + Pf1N1B4_410 0.21 -1.2
479,127 + Pf1N1B4_410 0.21 +1.1
479,127 + Pf1N1B4_410 0.21 -2.4
479,127 + Pf1N1B4_410 0.21 -1.2
479,127 + Pf1N1B4_410 0.21 -1.3
479,127 + Pf1N1B4_410 0.21 -0.9
479,127 + -1.2
479,128 - -0.5
479,128 - Pf1N1B4_410 0.21 +1.1
479,128 - Pf1N1B4_410 0.21 -0.7
479,128 - Pf1N1B4_410 0.21 -1.5
479,128 - +0.1
479,128 - Pf1N1B4_410 0.21 +0.5
479,577 + Pf1N1B4_410 0.50 -2.9
479,578 - Pf1N1B4_410 0.50 -1.2
479,578 - Pf1N1B4_410 0.50 +0.1
479,578 - Pf1N1B4_410 0.50 -1.0
479,578 - Pf1N1B4_410 0.50 -3.0
479,578 - Pf1N1B4_410 0.50 -0.9
479,578 - Pf1N1B4_410 0.50 -2.1
479,578 - Pf1N1B4_410 0.50 -2.2
479,616 - Pf1N1B4_410 0.53 -1.5
479,616 - Pf1N1B4_410 0.53 +0.1
479,693 - Pf1N1B4_410 0.58 -1.1
479,730 + Pf1N1B4_410 0.60 -2.2
479,730 + -0.5
479,731 - -0.9
479,731 - +0.1
479,938 + Pf1N1B4_410 0.74 -2.8
480,154 - Pf1N1B4_410 0.88 -3.3
480,332 + -0.9
480,332 + -0.9
480,333 - -1.3
480,346 + -1.3
480,347 - -0.9
480,347 - -3.6
480,347 - -1.7
480,473 - -1.7
480,493 - -1.3
480,493 - -1.5
480,493 - -1.5
480,493 - -1.5
480,493 - -1.9
480,528 + Pf1N1B4_411 0.11 -0.9
480,528 + Pf1N1B4_411 0.11 -4.1
480,528 + Pf1N1B4_411 0.11 -1.3
480,528 + Pf1N1B4_411 0.11 -1.6
480,529 - Pf1N1B4_411 0.12 -1.5
480,529 - Pf1N1B4_411 0.12 +0.1
480,529 - Pf1N1B4_411 0.12 -0.7
480,529 - Pf1N1B4_411 0.12 -0.9
480,529 - Pf1N1B4_411 0.12 -3.2
480,529 - Pf1N1B4_411 0.12 -1.7
480,529 - Pf1N1B4_411 0.12 -1.1
480,529 - Pf1N1B4_411 0.12 -1.4
480,529 - Pf1N1B4_411 0.12 -1.6
480,549 + Pf1N1B4_411 0.14 -1.6
480,549 + Pf1N1B4_411 0.14 -0.9
480,886 + Pf1N1B4_411 0.47 -1.3
480,906 + Pf1N1B4_411 0.49 -1.7
480,907 - Pf1N1B4_411 0.49 -1.5
480,907 - Pf1N1B4_411 0.49 -2.1
480,924 + Pf1N1B4_411 0.51 -2.4
480,924 + Pf1N1B4_411 0.51 -0.5
480,925 - -1.5
480,925 - Pf1N1B4_411 0.51 -2.9
480,925 - Pf1N1B4_411 0.51 -0.9
480,925 - Pf1N1B4_411 0.51 -0.3
480,925 - Pf1N1B4_411 0.51 -2.4
481,345 + -0.9
481,345 + -0.7
481,345 + -2.1
481,346 - -1.3
481,346 - -1.5
481,346 - -0.5
481,346 - -1.3
481,346 - -1.7
481,346 - -1.5
481,346 - -1.7

Or see this region's nucleotide sequence