Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3647

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3644 and Pf1N1B4_3645 are separated by 11 nucleotidesPf1N1B4_3645 and Pf1N1B4_3646 overlap by 4 nucleotidesPf1N1B4_3646 and Pf1N1B4_3647 overlap by 8 nucleotidesPf1N1B4_3647 and Pf1N1B4_3648 are separated by 474 nucleotides Pf1N1B4_3644 - Cytochrome c heme lyase subunit CcmF, at 4,049,334 to 4,051,322 _3644 Pf1N1B4_3645 - Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase, at 4,051,334 to 4,051,855 _3645 Pf1N1B4_3646 - Cytochrome c heme lyase subunit CcmL, at 4,051,852 to 4,052,325 _3646 Pf1N1B4_3647 - Cytochrome c heme lyase subunit CcmH, at 4,052,318 to 4,053,520 _3647 Pf1N1B4_3648 - hypothetical protein, at 4,053,995 to 4,054,498 _3648 Position (kb) 4052 4053 4054Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4051.575 kb on + strand, within Pf1N1B4_3645at 4051.823 kb on + strandat 4051.823 kb on + strandat 4052.308 kb on - strandat 4052.646 kb on - strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.777 kb on + strand, within Pf1N1B4_3647at 4052.778 kb on - strand, within Pf1N1B4_3647at 4052.778 kb on - strand, within Pf1N1B4_3647at 4052.778 kb on - strand, within Pf1N1B4_3647at 4052.778 kb on - strand, within Pf1N1B4_3647at 4052.778 kb on - strand, within Pf1N1B4_3647at 4052.778 kb on - strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.795 kb on + strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strandat 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strandat 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.796 kb on - strand, within Pf1N1B4_3647at 4052.847 kb on + strand, within Pf1N1B4_3647at 4052.847 kb on + strand, within Pf1N1B4_3647at 4052.847 kb on + strand, within Pf1N1B4_3647at 4052.847 kb on + strand, within Pf1N1B4_3647at 4052.848 kb on - strandat 4052.848 kb on - strand, within Pf1N1B4_3647at 4052.848 kb on - strand, within Pf1N1B4_3647at 4052.900 kb on + strand, within Pf1N1B4_3647at 4052.900 kb on + strand, within Pf1N1B4_3647at 4052.900 kb on + strandat 4052.900 kb on + strandat 4052.900 kb on + strand, within Pf1N1B4_3647at 4052.901 kb on - strandat 4052.901 kb on - strand, within Pf1N1B4_3647at 4052.901 kb on - strand, within Pf1N1B4_3647at 4053.082 kb on + strand, within Pf1N1B4_3647at 4053.082 kb on + strand, within Pf1N1B4_3647at 4053.082 kb on + strand, within Pf1N1B4_3647at 4053.082 kb on + strand, within Pf1N1B4_3647at 4053.082 kb on + strand, within Pf1N1B4_3647at 4053.082 kb on + strand, within Pf1N1B4_3647at 4053.082 kb on + strand, within Pf1N1B4_3647at 4053.082 kb on + strand, within Pf1N1B4_3647at 4053.082 kb on + strand, within Pf1N1B4_3647at 4053.083 kb on - strand, within Pf1N1B4_3647at 4053.083 kb on - strand, within Pf1N1B4_3647at 4053.083 kb on - strand, within Pf1N1B4_3647at 4053.083 kb on - strand, within Pf1N1B4_3647at 4053.083 kb on - strandat 4053.083 kb on - strand, within Pf1N1B4_3647at 4053.083 kb on - strand, within Pf1N1B4_3647at 4053.083 kb on - strand, within Pf1N1B4_3647at 4053.173 kb on - strand, within Pf1N1B4_3647at 4053.518 kb on + strandat 4053.518 kb on + strandat 4053.518 kb on + strandat 4053.519 kb on - strandat 4053.568 kb on - strandat 4053.568 kb on - strandat 4053.756 kb on - strandat 4053.783 kb on + strandat 4053.783 kb on + strandat 4053.784 kb on - strandat 4053.828 kb on + strandat 4053.828 kb on + strandat 4053.829 kb on - strandat 4053.829 kb on - strandat 4053.829 kb on - strandat 4053.829 kb on - strandat 4053.829 kb on - strandat 4054.068 kb on + strandat 4054.068 kb on + strand, within Pf1N1B4_3648at 4054.068 kb on + strand, within Pf1N1B4_3648at 4054.097 kb on + strand, within Pf1N1B4_3648at 4054.097 kb on + strand, within Pf1N1B4_3648at 4054.097 kb on + strand, within Pf1N1B4_3648at 4054.098 kb on - strand, within Pf1N1B4_3648at 4054.098 kb on - strand, within Pf1N1B4_3648at 4054.098 kb on - strand, within Pf1N1B4_3648at 4054.098 kb on - strand, within Pf1N1B4_3648at 4054.098 kb on - strand, within Pf1N1B4_3648at 4054.098 kb on - strand, within Pf1N1B4_3648at 4054.265 kb on + strand, within Pf1N1B4_3648at 4054.333 kb on - strand, within Pf1N1B4_3648at 4054.448 kb on + strandat 4054.448 kb on + strandat 4054.448 kb on + strandat 4054.448 kb on + strandat 4054.449 kb on - strandat 4054.449 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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4,051,575 + Pf1N1B4_3645 0.46 +0.4
4,051,823 + -0.2
4,051,823 + -1.3
4,052,308 - -1.8
4,052,646 - Pf1N1B4_3647 0.27 -0.8
4,052,777 + Pf1N1B4_3647 0.38 -1.0
4,052,777 + Pf1N1B4_3647 0.38 +0.8
4,052,777 + Pf1N1B4_3647 0.38 -0.1
4,052,777 + Pf1N1B4_3647 0.38 -1.0
4,052,777 + Pf1N1B4_3647 0.38 +0.7
4,052,777 + Pf1N1B4_3647 0.38 -0.7
4,052,777 + Pf1N1B4_3647 0.38 -0.6
4,052,777 + Pf1N1B4_3647 0.38 +0.2
4,052,777 + Pf1N1B4_3647 0.38 +1.0
4,052,777 + Pf1N1B4_3647 0.38 +2.0
4,052,777 + Pf1N1B4_3647 0.38 -0.6
4,052,777 + Pf1N1B4_3647 0.38 -0.6
4,052,777 + Pf1N1B4_3647 0.38 -0.4
4,052,777 + Pf1N1B4_3647 0.38 -1.7
4,052,777 + Pf1N1B4_3647 0.38 -2.4
4,052,778 - Pf1N1B4_3647 0.38 -1.3
4,052,778 - Pf1N1B4_3647 0.38 -0.6
4,052,778 - Pf1N1B4_3647 0.38 -0.2
4,052,778 - Pf1N1B4_3647 0.38 +1.6
4,052,778 - Pf1N1B4_3647 0.38 +0.1
4,052,778 - Pf1N1B4_3647 0.38 -0.7
4,052,795 + Pf1N1B4_3647 0.40 -1.3
4,052,795 + Pf1N1B4_3647 0.40 -0.2
4,052,795 + Pf1N1B4_3647 0.40 -0.4
4,052,795 + Pf1N1B4_3647 0.40 -1.3
4,052,795 + Pf1N1B4_3647 0.40 +0.0
4,052,795 + Pf1N1B4_3647 0.40 -0.7
4,052,795 + Pf1N1B4_3647 0.40 +0.0
4,052,795 + Pf1N1B4_3647 0.40 -1.4
4,052,795 + Pf1N1B4_3647 0.40 -2.2
4,052,795 + Pf1N1B4_3647 0.40 -0.6
4,052,795 + Pf1N1B4_3647 0.40 +0.0
4,052,795 + Pf1N1B4_3647 0.40 -1.2
4,052,795 + Pf1N1B4_3647 0.40 +0.0
4,052,795 + Pf1N1B4_3647 0.40 +1.0
4,052,795 + Pf1N1B4_3647 0.40 +0.0
4,052,795 + Pf1N1B4_3647 0.40 -2.0
4,052,795 + Pf1N1B4_3647 0.40 +0.1
4,052,795 + Pf1N1B4_3647 0.40 -0.6
4,052,795 + Pf1N1B4_3647 0.40 -1.3
4,052,795 + Pf1N1B4_3647 0.40 -0.9
4,052,796 - Pf1N1B4_3647 0.40 -1.4
4,052,796 - Pf1N1B4_3647 0.40 +0.0
4,052,796 - Pf1N1B4_3647 0.40 -2.4
4,052,796 - Pf1N1B4_3647 0.40 -0.6
4,052,796 - +2.0
4,052,796 - Pf1N1B4_3647 0.40 -0.2
4,052,796 - -0.8
4,052,796 - Pf1N1B4_3647 0.40 -2.2
4,052,796 - Pf1N1B4_3647 0.40 +0.4
4,052,796 - Pf1N1B4_3647 0.40 -1.6
4,052,796 - Pf1N1B4_3647 0.40 +0.5
4,052,796 - Pf1N1B4_3647 0.40 -1.3
4,052,796 - Pf1N1B4_3647 0.40 +0.8
4,052,796 - Pf1N1B4_3647 0.40 -0.7
4,052,796 - Pf1N1B4_3647 0.40 -0.6
4,052,796 - Pf1N1B4_3647 0.40 -1.0
4,052,847 + Pf1N1B4_3647 0.44 -2.0
4,052,847 + Pf1N1B4_3647 0.44 -0.9
4,052,847 + Pf1N1B4_3647 0.44 -1.9
4,052,847 + Pf1N1B4_3647 0.44 -0.3
4,052,848 - +1.0
4,052,848 - Pf1N1B4_3647 0.44 -2.0
4,052,848 - Pf1N1B4_3647 0.44 -1.0
4,052,900 + Pf1N1B4_3647 0.48 -0.7
4,052,900 + Pf1N1B4_3647 0.48 +0.0
4,052,900 + -0.3
4,052,900 + -1.0
4,052,900 + Pf1N1B4_3647 0.48 -0.3
4,052,901 - -1.0
4,052,901 - Pf1N1B4_3647 0.48 -2.6
4,052,901 - Pf1N1B4_3647 0.48 -3.1
4,053,082 + Pf1N1B4_3647 0.64 -1.0
4,053,082 + Pf1N1B4_3647 0.64 -2.0
4,053,082 + Pf1N1B4_3647 0.64 +0.0
4,053,082 + Pf1N1B4_3647 0.64 -1.0
4,053,082 + Pf1N1B4_3647 0.64 -1.6
4,053,082 + Pf1N1B4_3647 0.64 -0.6
4,053,082 + Pf1N1B4_3647 0.64 -0.6
4,053,082 + Pf1N1B4_3647 0.64 +1.0
4,053,082 + Pf1N1B4_3647 0.64 -0.2
4,053,083 - Pf1N1B4_3647 0.64 -1.7
4,053,083 - Pf1N1B4_3647 0.64 +1.0
4,053,083 - Pf1N1B4_3647 0.64 -0.7
4,053,083 - Pf1N1B4_3647 0.64 -0.4
4,053,083 - -0.6
4,053,083 - Pf1N1B4_3647 0.64 +0.3
4,053,083 - Pf1N1B4_3647 0.64 -1.3
4,053,083 - Pf1N1B4_3647 0.64 -1.0
4,053,173 - Pf1N1B4_3647 0.71 -0.7
4,053,518 + +1.0
4,053,518 + -0.2
4,053,518 + +1.0
4,053,519 - -0.6
4,053,568 - +0.0
4,053,568 - -0.7
4,053,756 - +0.3
4,053,783 + +0.5
4,053,783 + -0.4
4,053,784 - -1.0
4,053,828 + -1.0
4,053,828 + +1.0
4,053,829 - -0.1
4,053,829 - -1.3
4,053,829 - +0.0
4,053,829 - +0.2
4,053,829 - +3.3
4,054,068 + +0.0
4,054,068 + Pf1N1B4_3648 0.14 -0.3
4,054,068 + Pf1N1B4_3648 0.14 +0.0
4,054,097 + Pf1N1B4_3648 0.20 -0.4
4,054,097 + Pf1N1B4_3648 0.20 +0.7
4,054,097 + Pf1N1B4_3648 0.20 +0.4
4,054,098 - Pf1N1B4_3648 0.20 -0.2
4,054,098 - Pf1N1B4_3648 0.20 -0.8
4,054,098 - Pf1N1B4_3648 0.20 -0.3
4,054,098 - Pf1N1B4_3648 0.20 +0.3
4,054,098 - Pf1N1B4_3648 0.20 +1.0
4,054,098 - Pf1N1B4_3648 0.20 -0.2
4,054,265 + Pf1N1B4_3648 0.54 -0.2
4,054,333 - Pf1N1B4_3648 0.67 -0.4
4,054,448 + -0.3
4,054,448 + +0.0
4,054,448 + -0.3
4,054,448 + -0.3
4,054,449 - +1.0
4,054,449 - -1.9

Or see this region's nucleotide sequence