Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_205 and Pf1N1B4_206 are separated by 143 nucleotides Pf1N1B4_206 and Pf1N1B4_207 are separated by 153 nucleotides
Pf1N1B4_205 - Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76), at 251,402 to 252,814
_205
Pf1N1B4_206 - hypothetical protein, at 252,958 to 253,443
_206
Pf1N1B4_207 - Sensor histidine kinase, at 253,597 to 254,922
_207
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 252.002 kb on + strand, within Pf1N1B4_205 at 252.150 kb on + strand, within Pf1N1B4_205 at 252.150 kb on + strand, within Pf1N1B4_205 at 252.150 kb on + strand, within Pf1N1B4_205 at 252.151 kb on - strand, within Pf1N1B4_205 at 252.211 kb on - strand, within Pf1N1B4_205 at 252.384 kb on - strand, within Pf1N1B4_205 at 252.505 kb on + strand, within Pf1N1B4_205 at 252.506 kb on - strand, within Pf1N1B4_205 at 252.636 kb on + strand at 252.636 kb on + strand, within Pf1N1B4_205 at 252.636 kb on + strand, within Pf1N1B4_205 at 252.637 kb on - strand, within Pf1N1B4_205 at 252.637 kb on - strand at 252.637 kb on - strand, within Pf1N1B4_205 at 252.841 kb on + strand at 252.842 kb on - strand at 252.939 kb on + strand at 252.939 kb on + strand at 252.959 kb on + strand at 252.960 kb on - strand at 252.960 kb on - strand at 253.174 kb on + strand, within Pf1N1B4_206 at 253.174 kb on + strand, within Pf1N1B4_206 at 253.175 kb on - strand, within Pf1N1B4_206 at 253.175 kb on - strand at 253.175 kb on - strand, within Pf1N1B4_206 at 253.175 kb on - strand, within Pf1N1B4_206 at 253.175 kb on - strand, within Pf1N1B4_206 at 253.178 kb on + strand, within Pf1N1B4_206 at 253.178 kb on + strand, within Pf1N1B4_206 at 253.179 kb on - strand, within Pf1N1B4_206 at 253.179 kb on - strand, within Pf1N1B4_206 at 253.225 kb on - strand, within Pf1N1B4_206 at 253.256 kb on + strand, within Pf1N1B4_206 at 253.256 kb on + strand, within Pf1N1B4_206 at 253.302 kb on + strand, within Pf1N1B4_206 at 253.302 kb on + strand, within Pf1N1B4_206 at 253.302 kb on + strand, within Pf1N1B4_206 at 253.302 kb on + strand, within Pf1N1B4_206 at 253.302 kb on + strand, within Pf1N1B4_206 at 253.303 kb on - strand, within Pf1N1B4_206 at 253.303 kb on - strand, within Pf1N1B4_206 at 253.303 kb on - strand, within Pf1N1B4_206 at 253.303 kb on - strand, within Pf1N1B4_206 at 253.452 kb on + strand at 253.452 kb on + strand at 253.453 kb on - strand at 253.453 kb on - strand at 253.453 kb on - strand at 253.489 kb on - strand at 253.525 kb on + strand at 253.525 kb on + strand at 253.599 kb on - strand at 254.382 kb on + strand, within Pf1N1B4_207 at 254.382 kb on + strand, within Pf1N1B4_207
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 252,002 + Pf1N1B4_205 0.42 +0.4 252,150 + Pf1N1B4_205 0.53 -2.2 252,150 + Pf1N1B4_205 0.53 +0.2 252,150 + Pf1N1B4_205 0.53 -0.2 252,151 - Pf1N1B4_205 0.53 +0.1 252,211 - Pf1N1B4_205 0.57 -0.1 252,384 - Pf1N1B4_205 0.69 +0.3 252,505 + Pf1N1B4_205 0.78 +0.4 252,506 - Pf1N1B4_205 0.78 -0.4 252,636 + -0.1 252,636 + Pf1N1B4_205 0.87 -0.3 252,636 + Pf1N1B4_205 0.87 +1.5 252,637 - Pf1N1B4_205 0.87 +1.2 252,637 - +0.9 252,637 - Pf1N1B4_205 0.87 +3.5 252,841 + -0.2 252,842 - +0.3 252,939 + -0.6 252,939 + -1.4 252,959 + +0.5 252,960 - +0.9 252,960 - +0.4 253,174 + Pf1N1B4_206 0.44 -0.6 253,174 + Pf1N1B4_206 0.44 -1.1 253,175 - Pf1N1B4_206 0.45 +0.9 253,175 - -0.4 253,175 - Pf1N1B4_206 0.45 +0.5 253,175 - Pf1N1B4_206 0.45 -0.2 253,175 - Pf1N1B4_206 0.45 -1.6 253,178 + Pf1N1B4_206 0.45 -0.3 253,178 + Pf1N1B4_206 0.45 -2.4 253,179 - Pf1N1B4_206 0.45 -0.7 253,179 - Pf1N1B4_206 0.45 -1.3 253,225 - Pf1N1B4_206 0.55 -2.9 253,256 + Pf1N1B4_206 0.61 -1.9 253,256 + Pf1N1B4_206 0.61 -0.6 253,302 + Pf1N1B4_206 0.71 -1.4 253,302 + Pf1N1B4_206 0.71 +1.2 253,302 + Pf1N1B4_206 0.71 -0.3 253,302 + Pf1N1B4_206 0.71 +0.5 253,302 + Pf1N1B4_206 0.71 -1.1 253,303 - Pf1N1B4_206 0.71 +0.7 253,303 - Pf1N1B4_206 0.71 -0.5 253,303 - Pf1N1B4_206 0.71 -0.6 253,303 - Pf1N1B4_206 0.71 -0.5 253,452 + +1.3 253,452 + -0.4 253,453 - +0.9 253,453 - +0.4 253,453 - -0.6 253,489 - -0.1 253,525 + -0.3 253,525 + +0.9 253,599 - -1.5 254,382 + Pf1N1B4_207 0.59 +0.8 254,382 + Pf1N1B4_207 0.59 -0.3
Or see this region's nucleotide sequence