Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2020 and Pf1N1B4_2021 overlap by 21 nucleotides Pf1N1B4_2021 and Pf1N1B4_2022 overlap by 17 nucleotides
Pf1N1B4_2020 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 2,306,179 to 2,307,210
_2020
Pf1N1B4_2021 - hypothetical protein, at 2,307,190 to 2,307,489
_2021
Pf1N1B4_2022 - Transcriptional regulator, AraC family, at 2,307,473 to 2,308,471
_2022
Position (kb)
2307
2308 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2306.236 kb on + strand at 2306.236 kb on + strand at 2306.310 kb on - strand, within Pf1N1B4_2020 at 2306.358 kb on + strand, within Pf1N1B4_2020 at 2306.358 kb on + strand, within Pf1N1B4_2020 at 2306.358 kb on + strand, within Pf1N1B4_2020 at 2306.358 kb on + strand, within Pf1N1B4_2020 at 2306.359 kb on - strand, within Pf1N1B4_2020 at 2306.397 kb on - strand, within Pf1N1B4_2020 at 2306.472 kb on - strand, within Pf1N1B4_2020 at 2306.472 kb on - strand, within Pf1N1B4_2020 at 2306.472 kb on - strand, within Pf1N1B4_2020 at 2306.472 kb on - strand, within Pf1N1B4_2020 at 2306.591 kb on + strand, within Pf1N1B4_2020 at 2306.592 kb on - strand, within Pf1N1B4_2020 at 2306.592 kb on - strand, within Pf1N1B4_2020 at 2306.624 kb on + strand, within Pf1N1B4_2020 at 2306.702 kb on + strand, within Pf1N1B4_2020 at 2306.702 kb on + strand, within Pf1N1B4_2020 at 2306.702 kb on + strand, within Pf1N1B4_2020 at 2306.702 kb on + strand, within Pf1N1B4_2020 at 2306.703 kb on - strand, within Pf1N1B4_2020 at 2306.825 kb on + strand, within Pf1N1B4_2020 at 2306.826 kb on - strand, within Pf1N1B4_2020 at 2306.876 kb on + strand, within Pf1N1B4_2020 at 2306.876 kb on + strand, within Pf1N1B4_2020 at 2306.877 kb on - strand, within Pf1N1B4_2020 at 2306.877 kb on - strand, within Pf1N1B4_2020 at 2306.877 kb on - strand, within Pf1N1B4_2020 at 2306.879 kb on + strand, within Pf1N1B4_2020 at 2306.879 kb on + strand, within Pf1N1B4_2020 at 2306.879 kb on + strand, within Pf1N1B4_2020 at 2306.880 kb on - strand, within Pf1N1B4_2020 at 2306.942 kb on + strand, within Pf1N1B4_2020 at 2306.942 kb on + strand, within Pf1N1B4_2020 at 2307.012 kb on - strand, within Pf1N1B4_2020 at 2307.012 kb on - strand, within Pf1N1B4_2020 at 2307.091 kb on + strand, within Pf1N1B4_2020 at 2307.091 kb on + strand, within Pf1N1B4_2020 at 2307.091 kb on + strand, within Pf1N1B4_2020 at 2307.092 kb on - strand, within Pf1N1B4_2020 at 2307.197 kb on + strand at 2307.197 kb on + strand at 2307.197 kb on + strand at 2307.198 kb on - strand at 2307.198 kb on - strand at 2307.435 kb on + strand, within Pf1N1B4_2021 at 2307.435 kb on + strand, within Pf1N1B4_2021 at 2307.436 kb on - strand, within Pf1N1B4_2021 at 2307.436 kb on - strand, within Pf1N1B4_2021 at 2307.649 kb on - strand, within Pf1N1B4_2022 at 2307.649 kb on - strand, within Pf1N1B4_2022 at 2307.649 kb on - strand, within Pf1N1B4_2022 at 2307.755 kb on + strand, within Pf1N1B4_2022 at 2307.755 kb on + strand, within Pf1N1B4_2022 at 2307.755 kb on + strand, within Pf1N1B4_2022 at 2307.756 kb on - strand, within Pf1N1B4_2022 at 2307.756 kb on - strand, within Pf1N1B4_2022 at 2307.756 kb on - strand, within Pf1N1B4_2022 at 2307.756 kb on - strand, within Pf1N1B4_2022 at 2308.158 kb on - strand at 2308.196 kb on + strand, within Pf1N1B4_2022 at 2308.196 kb on + strand, within Pf1N1B4_2022 at 2308.196 kb on + strand, within Pf1N1B4_2022 at 2308.196 kb on + strand, within Pf1N1B4_2022 at 2308.197 kb on - strand, within Pf1N1B4_2022 at 2308.197 kb on - strand, within Pf1N1B4_2022 at 2308.197 kb on - strand, within Pf1N1B4_2022 at 2308.214 kb on + strand, within Pf1N1B4_2022 at 2308.215 kb on - strand, within Pf1N1B4_2022 at 2308.215 kb on - strand, within Pf1N1B4_2022 at 2308.237 kb on - strand, within Pf1N1B4_2022 at 2308.286 kb on + strand at 2308.286 kb on + strand, within Pf1N1B4_2022 at 2308.287 kb on - strand, within Pf1N1B4_2022 at 2308.488 kb on + strand at 2308.488 kb on + strand at 2308.488 kb on + strand at 2308.489 kb on - strand at 2308.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,306,236 + -0.7 2,306,236 + -0.4 2,306,310 - Pf1N1B4_2020 0.13 -0.9 2,306,358 + Pf1N1B4_2020 0.17 +0.1 2,306,358 + Pf1N1B4_2020 0.17 -0.5 2,306,358 + Pf1N1B4_2020 0.17 +0.1 2,306,358 + Pf1N1B4_2020 0.17 +0.9 2,306,359 - Pf1N1B4_2020 0.17 +0.1 2,306,397 - Pf1N1B4_2020 0.21 -1.7 2,306,472 - Pf1N1B4_2020 0.28 +0.6 2,306,472 - Pf1N1B4_2020 0.28 +0.3 2,306,472 - Pf1N1B4_2020 0.28 -0.2 2,306,472 - Pf1N1B4_2020 0.28 -0.7 2,306,591 + Pf1N1B4_2020 0.40 -0.4 2,306,592 - Pf1N1B4_2020 0.40 -0.7 2,306,592 - Pf1N1B4_2020 0.40 -0.9 2,306,624 + Pf1N1B4_2020 0.43 -0.6 2,306,702 + Pf1N1B4_2020 0.51 -0.4 2,306,702 + Pf1N1B4_2020 0.51 -0.3 2,306,702 + Pf1N1B4_2020 0.51 -0.5 2,306,702 + Pf1N1B4_2020 0.51 +1.2 2,306,703 - Pf1N1B4_2020 0.51 -0.9 2,306,825 + Pf1N1B4_2020 0.63 -2.3 2,306,826 - Pf1N1B4_2020 0.63 -0.2 2,306,876 + Pf1N1B4_2020 0.68 +2.0 2,306,876 + Pf1N1B4_2020 0.68 -0.1 2,306,877 - Pf1N1B4_2020 0.68 -0.6 2,306,877 - Pf1N1B4_2020 0.68 -0.7 2,306,877 - Pf1N1B4_2020 0.68 +0.1 2,306,879 + Pf1N1B4_2020 0.68 -0.5 2,306,879 + Pf1N1B4_2020 0.68 -1.7 2,306,879 + Pf1N1B4_2020 0.68 -1.7 2,306,880 - Pf1N1B4_2020 0.68 +0.1 2,306,942 + Pf1N1B4_2020 0.74 +0.2 2,306,942 + Pf1N1B4_2020 0.74 -0.4 2,307,012 - Pf1N1B4_2020 0.81 -1.4 2,307,012 - Pf1N1B4_2020 0.81 -0.3 2,307,091 + Pf1N1B4_2020 0.88 +0.9 2,307,091 + Pf1N1B4_2020 0.88 -0.5 2,307,091 + Pf1N1B4_2020 0.88 +0.6 2,307,092 - Pf1N1B4_2020 0.88 +0.2 2,307,197 + -0.4 2,307,197 + +0.1 2,307,197 + -0.5 2,307,198 - +0.1 2,307,198 - +0.6 2,307,435 + Pf1N1B4_2021 0.82 +0.1 2,307,435 + Pf1N1B4_2021 0.82 +0.1 2,307,436 - Pf1N1B4_2021 0.82 -2.4 2,307,436 - Pf1N1B4_2021 0.82 -2.2 2,307,649 - Pf1N1B4_2022 0.18 -0.5 2,307,649 - Pf1N1B4_2022 0.18 -0.2 2,307,649 - Pf1N1B4_2022 0.18 -0.2 2,307,755 + Pf1N1B4_2022 0.28 -1.9 2,307,755 + Pf1N1B4_2022 0.28 -0.2 2,307,755 + Pf1N1B4_2022 0.28 -0.4 2,307,756 - Pf1N1B4_2022 0.28 -0.2 2,307,756 - Pf1N1B4_2022 0.28 +0.5 2,307,756 - Pf1N1B4_2022 0.28 -0.2 2,307,756 - Pf1N1B4_2022 0.28 +0.6 2,308,158 - -1.4 2,308,196 + Pf1N1B4_2022 0.72 -0.5 2,308,196 + Pf1N1B4_2022 0.72 +1.2 2,308,196 + Pf1N1B4_2022 0.72 -0.4 2,308,196 + Pf1N1B4_2022 0.72 -1.4 2,308,197 - Pf1N1B4_2022 0.72 -0.8 2,308,197 - Pf1N1B4_2022 0.72 +0.4 2,308,197 - Pf1N1B4_2022 0.72 +0.1 2,308,214 + Pf1N1B4_2022 0.74 +0.8 2,308,215 - Pf1N1B4_2022 0.74 -0.2 2,308,215 - Pf1N1B4_2022 0.74 +0.6 2,308,237 - Pf1N1B4_2022 0.76 +0.8 2,308,286 + +0.1 2,308,286 + Pf1N1B4_2022 0.81 -0.4 2,308,287 - Pf1N1B4_2022 0.81 +0.5 2,308,488 + +0.2 2,308,488 + -0.2 2,308,488 + -0.5 2,308,489 - -0.5 2,308,489 - +0.6
Or see this region's nucleotide sequence