Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01560 and MMJJ_RS01565 are separated by 43 nucleotides MMJJ_RS01565 and MMJJ_RS01570 are separated by 27 nucleotides MMJJ_RS01570 and MMJJ_RS01575 are separated by 48 nucleotides MMJJ_RS01575 and MMJJ_RS01580 overlap by 4 nucleotides
MMJJ_RS01560: MMJJ_RS01560 - DUF2115 domain-containing protein, at 304,106 to 304,594
_RS01560
MMJJ_RS01565: MMJJ_RS01565 - TIGR00267 family protein, at 304,638 to 305,198
_RS01565
MMJJ_RS01570: MMJJ_RS01570 - SulP family inorganic anion transporter, at 305,226 to 306,845
_RS01570
MMJJ_RS01575: MMJJ_RS01575 - hypothetical protein, at 306,894 to 307,124
_RS01575
MMJJ_RS01580: MMJJ_RS01580 - phosphoadenosine phosphosulfate reductase family protein, at 307,121 to 307,996
_RS01580
Position (kb) 305
306
307 Strain fitness (log2 ratio) -1
0
1
2 at 304.498 kb on - strand, within MMJJ_RS01560 at 304.551 kb on - strand at 304.620 kb on - strand at 304.620 kb on - strand at 304.628 kb on - strand at 304.628 kb on - strand at 304.628 kb on - strand at 304.628 kb on - strand at 304.629 kb on + strand at 304.629 kb on + strand at 304.631 kb on - strand at 304.635 kb on - strand at 304.635 kb on - strand at 304.636 kb on + strand at 304.636 kb on + strand at 304.636 kb on + strand at 304.648 kb on + strand at 304.786 kb on + strand, within MMJJ_RS01565 at 304.820 kb on - strand, within MMJJ_RS01565 at 304.873 kb on - strand, within MMJJ_RS01565 at 304.874 kb on + strand, within MMJJ_RS01565 at 304.874 kb on + strand, within MMJJ_RS01565 at 304.886 kb on + strand, within MMJJ_RS01565 at 304.987 kb on + strand, within MMJJ_RS01565 at 305.016 kb on - strand, within MMJJ_RS01565 at 305.018 kb on - strand, within MMJJ_RS01565 at 305.025 kb on - strand, within MMJJ_RS01565 at 305.027 kb on - strand, within MMJJ_RS01565 at 305.063 kb on - strand, within MMJJ_RS01565 at 305.064 kb on + strand, within MMJJ_RS01565 at 305.064 kb on + strand, within MMJJ_RS01565 at 305.146 kb on - strand at 305.146 kb on - strand at 305.146 kb on - strand at 305.146 kb on - strand at 305.146 kb on - strand at 305.146 kb on - strand at 305.147 kb on + strand at 305.147 kb on + strand at 305.147 kb on + strand at 305.147 kb on + strand at 305.147 kb on + strand at 305.189 kb on - strand at 305.200 kb on + strand at 305.214 kb on - strand at 305.228 kb on + strand at 305.228 kb on + strand at 305.264 kb on - strand at 305.276 kb on - strand at 305.277 kb on + strand at 305.283 kb on - strand at 305.284 kb on + strand at 305.288 kb on - strand at 305.307 kb on - strand at 305.363 kb on - strand at 305.364 kb on + strand at 305.365 kb on - strand at 305.365 kb on - strand at 305.366 kb on + strand at 305.366 kb on + strand at 305.382 kb on + strand at 305.410 kb on - strand, within MMJJ_RS01570 at 305.433 kb on - strand, within MMJJ_RS01570 at 305.434 kb on + strand, within MMJJ_RS01570 at 305.470 kb on + strand, within MMJJ_RS01570 at 305.521 kb on - strand, within MMJJ_RS01570 at 305.521 kb on - strand, within MMJJ_RS01570 at 305.522 kb on + strand, within MMJJ_RS01570 at 305.522 kb on + strand, within MMJJ_RS01570 at 305.522 kb on + strand, within MMJJ_RS01570 at 305.524 kb on + strand, within MMJJ_RS01570 at 305.524 kb on + strand, within MMJJ_RS01570 at 305.524 kb on + strand, within MMJJ_RS01570 at 305.524 kb on + strand, within MMJJ_RS01570 at 305.540 kb on - strand, within MMJJ_RS01570 at 305.541 kb on + strand, within MMJJ_RS01570 at 305.559 kb on - strand, within MMJJ_RS01570 at 305.560 kb on + strand, within MMJJ_RS01570 at 305.560 kb on + strand, within MMJJ_RS01570 at 305.599 kb on + strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.604 kb on + strand, within MMJJ_RS01570 at 305.634 kb on - strand, within MMJJ_RS01570 at 305.637 kb on - strand, within MMJJ_RS01570 at 305.666 kb on - strand, within MMJJ_RS01570 at 305.667 kb on + strand, within MMJJ_RS01570 at 305.711 kb on - strand, within MMJJ_RS01570 at 305.712 kb on + strand, within MMJJ_RS01570 at 305.733 kb on - strand, within MMJJ_RS01570 at 305.785 kb on + strand, within MMJJ_RS01570 at 305.799 kb on - strand, within MMJJ_RS01570 at 305.800 kb on + strand, within MMJJ_RS01570 at 305.804 kb on - strand, within MMJJ_RS01570 at 305.804 kb on - strand, within MMJJ_RS01570 at 305.804 kb on - strand, within MMJJ_RS01570 at 305.805 kb on + strand, within MMJJ_RS01570 at 305.805 kb on + strand, within MMJJ_RS01570 at 305.809 kb on + strand, within MMJJ_RS01570 at 305.817 kb on - strand, within MMJJ_RS01570 at 305.820 kb on - strand, within MMJJ_RS01570 at 305.820 kb on - strand, within MMJJ_RS01570 at 305.868 kb on + strand, within MMJJ_RS01570 at 305.868 kb on + strand, within MMJJ_RS01570 at 305.871 kb on - strand, within MMJJ_RS01570 at 305.872 kb on + strand, within MMJJ_RS01570 at 305.951 kb on - strand, within MMJJ_RS01570 at 305.951 kb on - strand, within MMJJ_RS01570 at 305.951 kb on - strand, within MMJJ_RS01570 at 305.963 kb on - strand, within MMJJ_RS01570 at 305.997 kb on - strand, within MMJJ_RS01570 at 306.003 kb on - strand, within MMJJ_RS01570 at 306.003 kb on - strand, within MMJJ_RS01570 at 306.025 kb on + strand, within MMJJ_RS01570 at 306.069 kb on + strand, within MMJJ_RS01570 at 306.174 kb on - strand, within MMJJ_RS01570 at 306.185 kb on + strand, within MMJJ_RS01570 at 306.194 kb on - strand, within MMJJ_RS01570 at 306.194 kb on - strand, within MMJJ_RS01570 at 306.195 kb on + strand, within MMJJ_RS01570 at 306.205 kb on - strand, within MMJJ_RS01570 at 306.219 kb on - strand, within MMJJ_RS01570 at 306.219 kb on - strand, within MMJJ_RS01570 at 306.224 kb on - strand, within MMJJ_RS01570 at 306.303 kb on - strand, within MMJJ_RS01570 at 306.303 kb on - strand, within MMJJ_RS01570 at 306.385 kb on + strand, within MMJJ_RS01570 at 306.434 kb on - strand, within MMJJ_RS01570 at 306.458 kb on - strand, within MMJJ_RS01570 at 306.459 kb on + strand, within MMJJ_RS01570 at 306.464 kb on - strand, within MMJJ_RS01570 at 306.464 kb on - strand, within MMJJ_RS01570 at 306.465 kb on + strand, within MMJJ_RS01570 at 306.474 kb on - strand, within MMJJ_RS01570 at 306.486 kb on + strand, within MMJJ_RS01570 at 306.506 kb on - strand, within MMJJ_RS01570 at 306.507 kb on + strand, within MMJJ_RS01570 at 306.593 kb on - strand, within MMJJ_RS01570 at 306.603 kb on - strand, within MMJJ_RS01570 at 306.628 kb on + strand, within MMJJ_RS01570 at 306.636 kb on - strand, within MMJJ_RS01570 at 306.650 kb on - strand, within MMJJ_RS01570 at 306.831 kb on - strand at 306.858 kb on - strand at 306.860 kb on - strand at 307.031 kb on - strand at 307.032 kb on + strand, within MMJJ_RS01575 at 307.168 kb on - strand at 307.168 kb on - strand at 307.169 kb on + strand at 307.170 kb on - strand at 307.172 kb on - strand at 307.173 kb on + strand at 307.173 kb on + strand at 307.173 kb on + strand at 307.241 kb on + strand, within MMJJ_RS01580 at 307.316 kb on - strand, within MMJJ_RS01580 at 307.374 kb on + strand, within MMJJ_RS01580 at 307.381 kb on - strand, within MMJJ_RS01580 at 307.382 kb on + strand, within MMJJ_RS01580 at 307.382 kb on + strand, within MMJJ_RS01580 at 307.382 kb on + strand, within MMJJ_RS01580 at 307.382 kb on + strand, within MMJJ_RS01580 at 307.382 kb on + strand, within MMJJ_RS01580 at 307.383 kb on - strand, within MMJJ_RS01580 at 307.384 kb on + strand, within MMJJ_RS01580 at 307.384 kb on + strand, within MMJJ_RS01580 at 307.387 kb on - strand, within MMJJ_RS01580 at 307.388 kb on + strand, within MMJJ_RS01580 at 307.388 kb on + strand, within MMJJ_RS01580 at 307.388 kb on + strand, within MMJJ_RS01580 at 307.405 kb on - strand, within MMJJ_RS01580 at 307.406 kb on + strand, within MMJJ_RS01580 at 307.407 kb on - strand, within MMJJ_RS01580 at 307.429 kb on - strand, within MMJJ_RS01580 at 307.429 kb on - strand, within MMJJ_RS01580 at 307.429 kb on - strand, within MMJJ_RS01580 at 307.429 kb on - strand, within MMJJ_RS01580 at 307.429 kb on - strand, within MMJJ_RS01580 at 307.430 kb on + strand, within MMJJ_RS01580 at 307.430 kb on + strand, within MMJJ_RS01580 at 307.430 kb on + strand, within MMJJ_RS01580 at 307.540 kb on - strand, within MMJJ_RS01580 at 307.541 kb on + strand, within MMJJ_RS01580 at 307.557 kb on + strand, within MMJJ_RS01580 at 307.661 kb on + strand, within MMJJ_RS01580 at 307.669 kb on - strand, within MMJJ_RS01580 at 307.706 kb on - strand, within MMJJ_RS01580 at 307.713 kb on + strand, within MMJJ_RS01580 at 307.747 kb on + strand, within MMJJ_RS01580 at 307.798 kb on + strand, within MMJJ_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 304,498 - MMJJ_RS01560 0.80 +1.6 304,551 - +1.7 304,620 - -0.1 304,620 - +0.2 304,628 - -0.3 304,628 - -0.9 304,628 - +0.2 304,628 - +0.3 304,629 + -0.1 304,629 + -0.8 304,631 - -0.0 304,635 - -0.5 304,635 - -0.5 304,636 + -0.2 304,636 + -1.0 304,636 + +0.2 304,648 + +0.5 304,786 + MMJJ_RS01565 0.26 -0.7 304,820 - MMJJ_RS01565 0.32 -0.3 304,873 - MMJJ_RS01565 0.42 +0.5 304,874 + MMJJ_RS01565 0.42 -0.2 304,874 + MMJJ_RS01565 0.42 +0.4 304,886 + MMJJ_RS01565 0.44 +0.1 304,987 + MMJJ_RS01565 0.62 -0.5 305,016 - MMJJ_RS01565 0.67 +0.9 305,018 - MMJJ_RS01565 0.68 +0.7 305,025 - MMJJ_RS01565 0.69 -0.2 305,027 - MMJJ_RS01565 0.69 +2.3 305,063 - MMJJ_RS01565 0.76 +1.2 305,064 + MMJJ_RS01565 0.76 -0.7 305,064 + MMJJ_RS01565 0.76 +1.5 305,146 - -0.1 305,146 - +0.1 305,146 - +0.8 305,146 - +1.2 305,146 - +0.2 305,146 - +0.2 305,147 + +0.7 305,147 + +0.5 305,147 + +0.3 305,147 + +0.6 305,147 + +0.8 305,189 - +1.7 305,200 + +1.3 305,214 - -0.8 305,228 + +0.9 305,228 + -0.2 305,264 - +2.2 305,276 - -0.9 305,277 + +0.7 305,283 - -0.2 305,284 + +0.5 305,288 - +1.2 305,307 - -0.5 305,363 - -0.7 305,364 + -0.0 305,365 - -0.1 305,365 - +0.4 305,366 + +0.9 305,366 + -0.0 305,382 + +2.5 305,410 - MMJJ_RS01570 0.11 -0.1 305,433 - MMJJ_RS01570 0.13 +0.1 305,434 + MMJJ_RS01570 0.13 -0.4 305,470 + MMJJ_RS01570 0.15 -0.5 305,521 - MMJJ_RS01570 0.18 +0.2 305,521 - MMJJ_RS01570 0.18 -1.4 305,522 + MMJJ_RS01570 0.18 +0.5 305,522 + MMJJ_RS01570 0.18 +0.7 305,522 + MMJJ_RS01570 0.18 -0.2 305,524 + MMJJ_RS01570 0.18 -0.5 305,524 + MMJJ_RS01570 0.18 -0.4 305,524 + MMJJ_RS01570 0.18 +0.2 305,524 + MMJJ_RS01570 0.18 +1.2 305,540 - MMJJ_RS01570 0.19 -0.0 305,541 + MMJJ_RS01570 0.19 +0.8 305,559 - MMJJ_RS01570 0.21 -1.2 305,560 + MMJJ_RS01570 0.21 -0.4 305,560 + MMJJ_RS01570 0.21 -1.0 305,599 + MMJJ_RS01570 0.23 -0.4 305,603 - MMJJ_RS01570 0.23 -0.3 305,603 - MMJJ_RS01570 0.23 +1.4 305,603 - MMJJ_RS01570 0.23 -0.6 305,603 - MMJJ_RS01570 0.23 -0.2 305,603 - MMJJ_RS01570 0.23 -0.4 305,604 + MMJJ_RS01570 0.23 -0.5 305,634 - MMJJ_RS01570 0.25 -0.8 305,637 - MMJJ_RS01570 0.25 -0.0 305,666 - MMJJ_RS01570 0.27 -0.0 305,667 + MMJJ_RS01570 0.27 -0.5 305,711 - MMJJ_RS01570 0.30 -0.4 305,712 + MMJJ_RS01570 0.30 -0.5 305,733 - MMJJ_RS01570 0.31 -0.5 305,785 + MMJJ_RS01570 0.35 +1.5 305,799 - MMJJ_RS01570 0.35 +0.9 305,800 + MMJJ_RS01570 0.35 -0.0 305,804 - MMJJ_RS01570 0.36 +0.3 305,804 - MMJJ_RS01570 0.36 +0.7 305,804 - MMJJ_RS01570 0.36 +0.0 305,805 + MMJJ_RS01570 0.36 -0.5 305,805 + MMJJ_RS01570 0.36 -0.1 305,809 + MMJJ_RS01570 0.36 -0.6 305,817 - MMJJ_RS01570 0.36 -0.3 305,820 - MMJJ_RS01570 0.37 +1.1 305,820 - MMJJ_RS01570 0.37 -0.7 305,868 + MMJJ_RS01570 0.40 -0.4 305,868 + MMJJ_RS01570 0.40 +0.6 305,871 - MMJJ_RS01570 0.40 -0.2 305,872 + MMJJ_RS01570 0.40 -0.1 305,951 - MMJJ_RS01570 0.45 -0.6 305,951 - MMJJ_RS01570 0.45 -1.0 305,951 - MMJJ_RS01570 0.45 -0.2 305,963 - MMJJ_RS01570 0.45 -0.2 305,997 - MMJJ_RS01570 0.48 +0.1 306,003 - MMJJ_RS01570 0.48 +0.3 306,003 - MMJJ_RS01570 0.48 +0.8 306,025 + MMJJ_RS01570 0.49 +0.0 306,069 + MMJJ_RS01570 0.52 +0.4 306,174 - MMJJ_RS01570 0.59 +1.9 306,185 + MMJJ_RS01570 0.59 -0.4 306,194 - MMJJ_RS01570 0.60 +0.1 306,194 - MMJJ_RS01570 0.60 -0.1 306,195 + MMJJ_RS01570 0.60 +0.1 306,205 - MMJJ_RS01570 0.60 -1.5 306,219 - MMJJ_RS01570 0.61 -0.5 306,219 - MMJJ_RS01570 0.61 +0.1 306,224 - MMJJ_RS01570 0.62 -0.1 306,303 - MMJJ_RS01570 0.66 +0.4 306,303 - MMJJ_RS01570 0.66 +0.1 306,385 + MMJJ_RS01570 0.72 -0.5 306,434 - MMJJ_RS01570 0.75 +0.3 306,458 - MMJJ_RS01570 0.76 -0.3 306,459 + MMJJ_RS01570 0.76 -0.3 306,464 - MMJJ_RS01570 0.76 +0.7 306,464 - MMJJ_RS01570 0.76 -1.1 306,465 + MMJJ_RS01570 0.76 -0.2 306,474 - MMJJ_RS01570 0.77 +0.9 306,486 + MMJJ_RS01570 0.78 -0.2 306,506 - MMJJ_RS01570 0.79 +0.7 306,507 + MMJJ_RS01570 0.79 -0.1 306,593 - MMJJ_RS01570 0.84 +0.2 306,603 - MMJJ_RS01570 0.85 +0.4 306,628 + MMJJ_RS01570 0.87 -0.9 306,636 - MMJJ_RS01570 0.87 -0.3 306,650 - MMJJ_RS01570 0.88 +0.3 306,831 - -0.6 306,858 - -0.8 306,860 - +0.2 307,031 - -0.5 307,032 + MMJJ_RS01575 0.60 +2.3 307,168 - +0.4 307,168 - +0.2 307,169 + -0.9 307,170 - -0.5 307,172 - -0.2 307,173 + +0.7 307,173 + -0.6 307,173 + -0.0 307,241 + MMJJ_RS01580 0.14 -0.3 307,316 - MMJJ_RS01580 0.22 -0.1 307,374 + MMJJ_RS01580 0.29 -0.3 307,381 - MMJJ_RS01580 0.30 -0.5 307,382 + MMJJ_RS01580 0.30 -0.1 307,382 + MMJJ_RS01580 0.30 -0.6 307,382 + MMJJ_RS01580 0.30 -0.3 307,382 + MMJJ_RS01580 0.30 -0.6 307,382 + MMJJ_RS01580 0.30 +1.0 307,383 - MMJJ_RS01580 0.30 +0.5 307,384 + MMJJ_RS01580 0.30 -0.0 307,384 + MMJJ_RS01580 0.30 -1.7 307,387 - MMJJ_RS01580 0.30 -0.5 307,388 + MMJJ_RS01580 0.30 -0.3 307,388 + MMJJ_RS01580 0.30 -0.3 307,388 + MMJJ_RS01580 0.30 +0.5 307,405 - MMJJ_RS01580 0.32 +1.3 307,406 + MMJJ_RS01580 0.33 -0.3 307,407 - MMJJ_RS01580 0.33 +0.4 307,429 - MMJJ_RS01580 0.35 -0.5 307,429 - MMJJ_RS01580 0.35 +0.3 307,429 - MMJJ_RS01580 0.35 -0.6 307,429 - MMJJ_RS01580 0.35 +0.9 307,429 - MMJJ_RS01580 0.35 -0.1 307,430 + MMJJ_RS01580 0.35 -0.3 307,430 + MMJJ_RS01580 0.35 +0.4 307,430 + MMJJ_RS01580 0.35 -0.3 307,540 - MMJJ_RS01580 0.48 -0.6 307,541 + MMJJ_RS01580 0.48 +0.1 307,557 + MMJJ_RS01580 0.50 -0.7 307,661 + MMJJ_RS01580 0.62 -0.5 307,669 - MMJJ_RS01580 0.63 -0.3 307,706 - MMJJ_RS01580 0.67 +0.3 307,713 + MMJJ_RS01580 0.68 -0.0 307,747 + MMJJ_RS01580 0.71 +0.1 307,798 + MMJJ_RS01580 0.77 +0.1
Or see this region's nucleotide sequence