Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24740

Experiment: R2A with Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS24735 and CA265_RS24740 are separated by 224 nucleotidesCA265_RS24740 and CA265_RS24745 are separated by 199 nucleotides CA265_RS24735: CA265_RS24735 - ribose-phosphate pyrophosphokinase, at 6,040,881 to 6,041,822 _RS24735 CA265_RS24740: CA265_RS24740 - 50S ribosomal protein L25/general stress protein Ctc, at 6,042,047 to 6,042,631 _RS24740 CA265_RS24745: CA265_RS24745 - aminoacyl-tRNA hydrolase, at 6,042,831 to 6,043,391 _RS24745 Position (kb) 6042 6043Strain fitness (log2 ratio) -1 0 1at 6041.820 kb on + strandat 6041.820 kb on + strandat 6041.852 kb on + strandat 6041.874 kb on + strandat 6041.874 kb on + strandat 6041.894 kb on + strandat 6041.944 kb on + strandat 6041.950 kb on + strandat 6042.697 kb on + strandat 6042.768 kb on - strandat 6042.777 kb on + strandat 6042.779 kb on + strandat 6042.780 kb on - strandat 6043.397 kb on - strandat 6043.404 kb on + strandat 6043.447 kb on - strandat 6043.490 kb on - strandat 6043.491 kb on + strandat 6043.491 kb on + strandat 6043.492 kb on - strandat 6043.492 kb on - strandat 6043.509 kb on - strandat 6043.509 kb on - strandat 6043.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml
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6,041,820 + +0.2
6,041,820 + +0.4
6,041,852 + -1.2
6,041,874 + +0.8
6,041,874 + +1.5
6,041,894 + -0.7
6,041,944 + +0.1
6,041,950 + +0.4
6,042,697 + +0.7
6,042,768 - +0.9
6,042,777 + +1.1
6,042,779 + +1.0
6,042,780 - -0.3
6,043,397 - +0.1
6,043,404 + -0.2
6,043,447 - -1.2
6,043,490 - -0.0
6,043,491 + -0.6
6,043,491 + +0.4
6,043,492 - +0.9
6,043,492 - +0.4
6,043,509 - +0.3
6,043,509 - +0.2
6,043,519 - -0.8

Or see this region's nucleotide sequence