Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12420

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
3,096,630	-		CA265_RS12410	0.68	+0.6
3,096,645	-		CA265_RS12410	0.69	+0.1
3,096,651	+		CA265_RS12410	0.70	-0.9
3,096,651	+		CA265_RS12410	0.70	+0.1
3,096,652	-		CA265_RS12410	0.70	+0.7
3,096,652	-		CA265_RS12410	0.70	-0.3
3,096,652	-		CA265_RS12410	0.70	+1.1
3,096,708	-		CA265_RS12410	0.76	-0.1
3,096,841	-		CA265_RS12410	0.89	-0.9
3,096,866	+				-0.4
3,096,892	-				-0.4
3,096,912	+				+0.7
3,096,913	-				+0.7
3,096,913	-				+0.6
3,096,924	-				+0.5
3,096,935	+				+1.1
3,096,936	-				+0.6
3,096,956	+				+1.0
3,097,090	+				+0.1
3,097,095	+				+0.7
3,097,133	-				+1.0
3,097,158	+		CA265_RS12415	0.12	-0.3
3,097,159	-		CA265_RS12415	0.13	+0.2
3,097,159	-		CA265_RS12415	0.13	+0.1
3,097,192	+		CA265_RS12415	0.19	+0.2
3,097,224	-		CA265_RS12415	0.25	+0.1
3,097,224	-		CA265_RS12415	0.25	+1.5
3,097,256	+		CA265_RS12415	0.32	-0.0
3,097,257	-		CA265_RS12415	0.32	+0.8
3,097,280	+		CA265_RS12415	0.36	+0.3
3,097,313	-		CA265_RS12415	0.43	+0.9
3,097,316	+		CA265_RS12415	0.43	-0.3
3,097,325	-		CA265_RS12415	0.45	+0.2
3,097,365	-		CA265_RS12415	0.53	+0.6
3,097,380	-		CA265_RS12415	0.56	+0.3
3,097,451	-		CA265_RS12415	0.70	+0.5
3,097,457	+		CA265_RS12415	0.71	+0.4
3,097,516	+		CA265_RS12415	0.82	-0.2
3,097,519	-		CA265_RS12415	0.83	-0.9
3,097,524	-		CA265_RS12415	0.84	+0.9
3,097,552	+		CA265_RS12415	0.89	-0.8
3,097,573	+				-0.6
3,097,607	+				-0.2
3,097,643	+				+0.3
3,097,651	-				-0.8
3,097,654	+				-0.8
3,097,698	-				+0.1
3,097,758	-				-1.1
3,097,787	+		CA265_RS12420	0.11	-0.3
3,097,787	+		CA265_RS12420	0.11	-0.9
3,097,788	-		CA265_RS12420	0.11	-1.1
3,097,788	-		CA265_RS12420	0.11	-1.2
3,097,813	+		CA265_RS12420	0.12	-1.1
3,097,813	+		CA265_RS12420	0.12	-2.3
3,097,814	-		CA265_RS12420	0.12	-0.9
3,097,814	-		CA265_RS12420	0.12	-1.0
3,097,870	+		CA265_RS12420	0.15	-1.2
3,097,921	-		CA265_RS12420	0.18	-0.8
3,097,984	-		CA265_RS12420	0.21	-0.3
3,097,984	-		CA265_RS12420	0.21	-0.6
3,098,010	+		CA265_RS12420	0.22	-0.3
3,098,028	-		CA265_RS12420	0.23	-0.1
3,098,028	-		CA265_RS12420	0.23	-0.9
3,098,067	-		CA265_RS12420	0.25	-0.0
3,098,078	+		CA265_RS12420	0.26	-1.1
3,098,079	-		CA265_RS12420	0.26	+0.1
3,098,155	-		CA265_RS12420	0.30	+0.6
3,098,158	-		CA265_RS12420	0.30	-0.8
3,098,210	+		CA265_RS12420	0.33	-0.3
3,098,297	+		CA265_RS12420	0.37	+0.0
3,098,298	-		CA265_RS12420	0.37	+0.0
3,098,298	-		CA265_RS12420	0.37	+0.5
3,098,299	+		CA265_RS12420	0.37	+0.7
3,098,300	-		CA265_RS12420	0.37	-1.0
3,098,490	+		CA265_RS12420	0.47	-0.6
3,098,490	+		CA265_RS12420	0.47	+0.8
3,098,498	+		CA265_RS12420	0.48	-0.2
3,098,519	+		CA265_RS12420	0.49	+0.5
3,098,519	+		CA265_RS12420	0.49	-1.8
3,098,584	+		CA265_RS12420	0.52	-0.8
3,098,585	-		CA265_RS12420	0.52	-0.3
3,098,591	+		CA265_RS12420	0.52	-0.8
3,098,612	+		CA265_RS12420	0.53	-0.1
3,098,647	+		CA265_RS12420	0.55	-0.2
3,098,679	+		CA265_RS12420	0.57	-0.7
3,098,679	+		CA265_RS12420	0.57	-0.8
3,098,710	-		CA265_RS12420	0.58	-2.8
3,098,754	-		CA265_RS12420	0.61	-0.0
3,098,767	+		CA265_RS12420	0.61	+0.2
3,098,768	-		CA265_RS12420	0.61	-0.8
3,098,791	+		CA265_RS12420	0.63	+0.7
3,098,791	+		CA265_RS12420	0.63	-0.8
3,098,792	-		CA265_RS12420	0.63	-0.2
3,098,812	+		CA265_RS12420	0.64	-0.1
3,098,812	+		CA265_RS12420	0.64	-1.4
3,098,832	+		CA265_RS12420	0.65	-1.0
3,098,856	+		CA265_RS12420	0.66	+0.4
3,098,857	-		CA265_RS12420	0.66	-0.3
3,098,913	+		CA265_RS12420	0.69	+0.8
3,098,914	-		CA265_RS12420	0.69	+0.9
3,098,950	+		CA265_RS12420	0.71	+0.5
3,098,974	-		CA265_RS12420	0.72	-0.7
3,098,997	+		CA265_RS12420	0.73	+0.0
3,099,009	-		CA265_RS12420	0.74	-1.9
3,099,085	+		CA265_RS12420	0.78	+0.4
3,099,086	-		CA265_RS12420	0.78	+0.4
3,099,086	-		CA265_RS12420	0.78	+0.3
3,099,127	+		CA265_RS12420	0.80	-0.2
3,099,127	+		CA265_RS12420	0.80	+0.7
3,099,128	-		CA265_RS12420	0.80	+2.6
3,099,140	-		CA265_RS12420	0.81	-1.1
3,099,220	+		CA265_RS12420	0.85	-0.2
3,099,222	+		CA265_RS12420	0.85	-0.2
3,099,223	-		CA265_RS12420	0.85	+0.4
3,099,234	-		CA265_RS12420	0.85	-0.2
3,099,246	+		CA265_RS12420	0.86	-1.2
3,099,258	-		CA265_RS12420	0.87	-0.6
3,099,285	-		CA265_RS12420	0.88	+1.0
3,099,326	+				-0.4
3,099,328	+				+0.3
3,099,328	+				+0.1
3,099,328	+				-0.0
3,099,328	+				+0.5
3,099,329	-				+0.3
3,099,339	+				+0.4
3,099,409	-				+0.6
3,099,469	-				+0.4
3,099,469	-				-0.2
3,099,527	+				-0.3
3,099,528	-				-0.4
3,099,531	+				-0.2
3,099,557	-				-1.0
3,099,557	-				-0.6
3,099,581	+				+0.8
3,099,582	-				-2.8
3,099,584	+				-0.4
3,099,585	-				+0.6
3,099,608	-				-0.0
3,099,636	-				-0.4
3,099,682	-				+1.2
3,099,789	-				-0.0
3,099,843	+				-0.3
3,099,844	-				-0.8
3,099,847	-				-1.5
3,099,902	+				+0.3
3,099,952	-		CA265_RS12425	0.11	-2.2
3,099,971	-		CA265_RS12425	0.12	-0.1
3,099,980	-		CA265_RS12425	0.12	-0.4
3,100,025	-		CA265_RS12425	0.13	-1.2
3,100,050	+		CA265_RS12425	0.14	-0.3
3,100,080	+		CA265_RS12425	0.15	-1.7
3,100,080	+		CA265_RS12425	0.15	-0.6
3,100,113	-		CA265_RS12425	0.16	-0.4
3,100,145	+		CA265_RS12425	0.17	+0.8
3,100,154	+		CA265_RS12425	0.17	-0.2
3,100,158	+		CA265_RS12425	0.17	-0.4
3,100,224	-		CA265_RS12425	0.19	-1.6
3,100,229	+		CA265_RS12425	0.19	-0.2
3,100,270	+		CA265_RS12425	0.20	+1.9
3,100,276	-		CA265_RS12425	0.20	-0.6
3,100,295	+		CA265_RS12425	0.21	-1.8
3,100,296	-		CA265_RS12425	0.21	-0.2
3,100,314	+		CA265_RS12425	0.21	-1.0
3,100,315	-		CA265_RS12425	0.21	-0.9
3,100,344	-		CA265_RS12425	0.22	-0.5
3,100,492	+		CA265_RS12425	0.26	-0.8
3,100,492	+		CA265_RS12425	0.26	-0.1
3,100,492	+		CA265_RS12425	0.26	-1.0
3,100,492	+		CA265_RS12425	0.26	-0.1
3,100,506	-		CA265_RS12425	0.27	-1.0