Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10795

Experiment: R2A with Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS10785 and CA265_RS10790 are separated by 117 nucleotidesCA265_RS10790 and CA265_RS10795 are separated by 0 nucleotidesCA265_RS10795 and CA265_RS10800 are separated by 76 nucleotides CA265_RS10785: CA265_RS10785 - peptidoglycan synthetase, at 2,663,584 to 2,664,936 _RS10785 CA265_RS10790: CA265_RS10790 - 50S ribosomal protein L11 methyltransferase, at 2,665,054 to 2,665,896 _RS10790 CA265_RS10795: CA265_RS10795 - triose-phosphate isomerase, at 2,665,897 to 2,666,658 _RS10795 CA265_RS10800: CA265_RS10800 - glucose-1-phosphate thymidylyltransferase, at 2,666,735 to 2,667,901 _RS10800 Position (kb) 2665 2666 2667Strain fitness (log2 ratio) -2 -1 0 1at 2664.928 kb on + strandat 2664.928 kb on + strandat 2664.929 kb on - strandat 2665.019 kb on - strandat 2665.041 kb on + strandat 2665.048 kb on - strandat 2665.112 kb on + strandat 2665.125 kb on - strandat 2665.208 kb on - strand, within CA265_RS10790at 2665.243 kb on - strand, within CA265_RS10790at 2665.249 kb on - strand, within CA265_RS10790at 2665.336 kb on - strand, within CA265_RS10790at 2665.380 kb on - strand, within CA265_RS10790at 2665.453 kb on - strand, within CA265_RS10790at 2665.555 kb on + strand, within CA265_RS10790at 2665.555 kb on + strand, within CA265_RS10790at 2665.565 kb on + strand, within CA265_RS10790at 2665.684 kb on + strand, within CA265_RS10790at 2665.685 kb on - strand, within CA265_RS10790at 2665.689 kb on + strand, within CA265_RS10790at 2665.690 kb on - strand, within CA265_RS10790at 2665.691 kb on + strand, within CA265_RS10790at 2665.713 kb on + strand, within CA265_RS10790at 2665.715 kb on + strand, within CA265_RS10790at 2665.756 kb on - strand, within CA265_RS10790at 2665.792 kb on - strand, within CA265_RS10790at 2665.792 kb on - strand, within CA265_RS10790at 2665.873 kb on - strandat 2665.877 kb on - strandat 2665.890 kb on - strandat 2665.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml
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2,664,928 + -1.1
2,664,928 + +0.5
2,664,929 - +0.0
2,665,019 - -0.7
2,665,041 + -1.0
2,665,048 - +0.7
2,665,112 + +0.2
2,665,125 - +0.3
2,665,208 - CA265_RS10790 0.18 +0.3
2,665,243 - CA265_RS10790 0.22 -0.7
2,665,249 - CA265_RS10790 0.23 +0.2
2,665,336 - CA265_RS10790 0.33 -0.8
2,665,380 - CA265_RS10790 0.39 -2.2
2,665,453 - CA265_RS10790 0.47 -0.2
2,665,555 + CA265_RS10790 0.59 -1.9
2,665,555 + CA265_RS10790 0.59 -0.3
2,665,565 + CA265_RS10790 0.61 -0.3
2,665,684 + CA265_RS10790 0.75 -0.8
2,665,685 - CA265_RS10790 0.75 -0.1
2,665,689 + CA265_RS10790 0.75 -1.2
2,665,690 - CA265_RS10790 0.75 -0.8
2,665,691 + CA265_RS10790 0.76 +0.5
2,665,713 + CA265_RS10790 0.78 -0.8
2,665,715 + CA265_RS10790 0.78 -0.4
2,665,756 - CA265_RS10790 0.83 -1.2
2,665,792 - CA265_RS10790 0.88 +0.1
2,665,792 - CA265_RS10790 0.88 +0.1
2,665,873 - -0.6
2,665,877 - +0.1
2,665,890 - +0.6
2,665,915 - +1.0

Or see this region's nucleotide sequence