Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09935

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
2,443,097	+		CA265_RS09925	0.20	+0.3
2,443,268	+		CA265_RS09925	0.51	+2.2
2,443,268	+		CA265_RS09925	0.51	-0.8
2,443,269	-		CA265_RS09925	0.51	+1.5
2,443,290	-		CA265_RS09925	0.54	+1.8
2,443,347	+		CA265_RS09925	0.65	-1.1
2,443,454	+		CA265_RS09925	0.83	+0.4
2,443,455	-		CA265_RS09925	0.84	-2.3
2,443,466	-		CA265_RS09925	0.86	+0.3
2,443,466	-		CA265_RS09925	0.86	-0.0
2,443,477	-		CA265_RS09925	0.87	+0.9
2,443,612	-				+0.5
2,443,647	-		CA265_RS09930	0.18	+0.0
2,443,667	+		CA265_RS09930	0.25	-1.8
2,443,724	-		CA265_RS09930	0.42	+0.1
2,443,807	+		CA265_RS09930	0.67	-0.3
2,443,808	-		CA265_RS09930	0.67	+2.5
2,443,813	+		CA265_RS09930	0.69	-2.0
2,443,814	-		CA265_RS09930	0.69	+0.1
2,444,013	-				+0.1
2,444,013	-				-0.8
2,444,013	-				+0.2
2,444,013	-				+0.8
2,444,031	+				-0.4
2,444,057	-				-0.8
2,444,080	+				-0.4
2,444,081	-				-0.4
2,444,089	+				-0.3
2,444,090	-				-0.3
2,444,147	+		CA265_RS09935	0.21	+0.6
2,444,180	-		CA265_RS09935	0.29	+0.3
2,444,287	+		CA265_RS09935	0.55	+0.6
2,444,287	+		CA265_RS09935	0.55	+1.6
2,444,362	+		CA265_RS09935	0.73	+0.3
2,444,451	-				-1.1
2,444,528	+				-0.6
2,444,529	-				-2.4
2,444,555	-				+0.3
2,444,590	-				-0.2
2,444,607	+				+1.1
2,444,684	+				+0.7
2,444,702	+				-0.4
2,444,717	+				-0.6
2,444,865	+				+1.1
2,444,909	-				+1.0
2,444,944	+				+0.1
2,445,032	-		CA265_RS09940	0.14	+0.1
2,445,053	+		CA265_RS09940	0.14	+1.1
2,445,116	+		CA265_RS09940	0.17	+0.2
2,445,122	+		CA265_RS09940	0.18	-0.8
2,445,122	+		CA265_RS09940	0.18	+0.8
2,445,148	-		CA265_RS09940	0.19	+1.0
2,445,155	-		CA265_RS09940	0.19	+0.6
2,445,155	-		CA265_RS09940	0.19	+0.5
2,445,158	+		CA265_RS09940	0.19	-0.1
2,445,226	-		CA265_RS09940	0.22	+0.2
2,445,237	+		CA265_RS09940	0.23	-0.7
2,445,420	+		CA265_RS09940	0.31	+0.9
2,445,432	-		CA265_RS09940	0.31	-0.6
2,445,432	-		CA265_RS09940	0.31	-1.5
2,445,432	-		CA265_RS09940	0.31	+0.5