Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08710

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
2,181,422	+		CA265_RS08705	0.74	+0.1
2,181,446	+		CA265_RS08705	0.76	-0.0
2,181,446	+		CA265_RS08705	0.76	+0.5
2,181,446	+		CA265_RS08705	0.76	-0.1
2,181,447	-		CA265_RS08705	0.76	-0.5
2,181,447	-		CA265_RS08705	0.76	-1.2
2,181,487	-		CA265_RS08705	0.79	-0.6
2,181,501	+		CA265_RS08705	0.80	+2.1
2,181,501	+		CA265_RS08705	0.80	+0.6
2,181,552	-		CA265_RS08705	0.83	-0.3
2,181,590	+		CA265_RS08705	0.86	+0.0
2,181,635	-		CA265_RS08705	0.89	-0.6
2,181,635	-		CA265_RS08705	0.89	-1.6
2,181,635	-		CA265_RS08705	0.89	-1.2
2,181,635	-		CA265_RS08705	0.89	-0.1
2,181,696	-				-0.3
2,181,746	-				-0.3
2,181,796	+				+0.2
2,181,860	-				+0.0
2,181,966	+				-0.8
2,181,986	-				+1.1
2,182,044	-				+0.1
2,182,093	+				+0.0
2,182,093	+				+1.7
2,182,155	+				-0.7
2,182,155	+				+0.0
2,182,156	-				+1.0
2,182,156	-				-0.7
2,182,156	-				-1.1
2,182,156	-				-0.9
2,182,513	+		CA265_RS08710	0.25	+0.2
2,182,608	+		CA265_RS08710	0.33	-0.1
2,182,608	+		CA265_RS08710	0.33	-0.5
2,182,660	-		CA265_RS08710	0.37	-0.4
2,182,660	-		CA265_RS08710	0.37	+1.6
2,182,661	+		CA265_RS08710	0.37	+0.6
2,182,661	+		CA265_RS08710	0.37	+1.2
2,182,661	+		CA265_RS08710	0.37	+0.1
2,182,732	-		CA265_RS08710	0.43	+0.6
2,182,779	-		CA265_RS08710	0.47	+0.7
2,182,779	-		CA265_RS08710	0.47	+0.9
2,182,793	+		CA265_RS08710	0.48	-0.1
2,182,973	+		CA265_RS08710	0.63	-0.1
2,182,979	+		CA265_RS08710	0.64	+0.4
2,182,987	+		CA265_RS08710	0.64	-0.9
2,182,987	+		CA265_RS08710	0.64	+0.6
2,183,016	-		CA265_RS08710	0.67	+1.2
2,183,016	-		CA265_RS08710	0.67	+0.3
2,183,018	+		CA265_RS08710	0.67	-1.2
2,183,018	+		CA265_RS08710	0.67	-0.2
2,183,119	+		CA265_RS08710	0.75	+0.2
2,183,141	+		CA265_RS08710	0.77	+0.2
2,183,144	-		CA265_RS08710	0.77	-0.1
2,183,144	-		CA265_RS08710	0.77	+2.2
2,183,274	+		CA265_RS08710	0.88	+0.5
2,183,284	-		CA265_RS08710	0.89	+0.1
2,183,308	-				-0.3
2,183,314	-				-0.2
2,183,381	-				+1.5
2,183,458	+				+0.2
2,183,491	+				-0.1
2,183,652	+				+0.7
2,183,675	+				-1.0
2,183,675	+				+0.2
2,183,675	+				-1.2
2,183,675	+				-0.1
2,183,676	-				+0.2
2,183,691	+				+0.1
2,183,786	+				+0.7
2,183,929	+		CA265_RS08715	0.23	+0.5
2,183,930	-		CA265_RS08715	0.23	+0.3
2,183,961	+		CA265_RS08715	0.26	-1.3
2,183,967	-		CA265_RS08715	0.26	+0.9
2,184,007	-		CA265_RS08715	0.30	-0.2
2,184,106	-		CA265_RS08715	0.39	+0.3
2,184,152	+		CA265_RS08715	0.43	-0.2
2,184,220	+		CA265_RS08715	0.49	+2.1
2,184,229	-		CA265_RS08715	0.50	+1.3
2,184,252	+		CA265_RS08715	0.52	-0.2
2,184,317	+		CA265_RS08715	0.58	+0.1
2,184,338	-		CA265_RS08715	0.60	-0.1
2,184,348	-		CA265_RS08715	0.61	+0.9
2,184,361	+		CA265_RS08715	0.62	-0.2
2,184,381	+		CA265_RS08715	0.64	-1.0