Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06780

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
1,673,179	+		CA265_RS06770	0.43	+0.0
1,673,189	+		CA265_RS06770	0.47	-0.6
1,673,192	-		CA265_RS06770	0.48	-1.2
1,673,231	+		CA265_RS06770	0.62	+0.3
1,673,231	+		CA265_RS06770	0.62	-0.5
1,673,232	-		CA265_RS06770	0.62	+0.6
1,673,232	-		CA265_RS06770	0.62	-0.2
1,673,264	+		CA265_RS06770	0.73	-0.6
1,673,264	+		CA265_RS06770	0.73	-0.5
1,673,359	+				-0.5
1,673,372	+				-1.1
1,673,372	+				+0.7
1,673,415	+				-0.1
1,673,466	+				+0.0
1,673,506	-				+0.8
1,673,535	+				+0.6
1,673,536	-				+0.9
1,673,537	+				-1.1
1,673,545	+				-0.2
1,673,545	+				-0.8
1,673,576	+				-1.0
1,673,577	-				+0.0
1,673,582	+				-0.4
1,673,601	+				-0.1
1,673,602	-				-0.9
1,673,636	-				-0.7
1,673,649	+		CA265_RS06775	0.13	-0.4
1,673,668	+		CA265_RS06775	0.19	+0.2
1,673,714	-		CA265_RS06775	0.33	-0.1
1,673,741	-		CA265_RS06775	0.42	-0.2
1,673,781	+		CA265_RS06775	0.54	+0.2
1,673,781	+		CA265_RS06775	0.54	+0.9
1,673,878	-		CA265_RS06775	0.84	-0.2
1,673,951	+				-0.5
1,674,013	-				-1.6
1,674,098	+				+0.5
1,674,098	+				+0.6
1,674,099	-				+0.8
1,674,099	-				-0.3
1,674,128	-				+0.0
1,674,136	+				+0.3
1,674,136	+				-0.1
1,674,137	-				+0.9
1,674,137	-				-0.2
1,674,137	-				-1.0
1,674,243	+				+0.9
1,674,245	+				-2.8
1,674,245	+				+0.2
1,674,246	-				-0.5
1,674,246	-				-0.1
1,674,279	+				+0.8
1,674,280	-				-0.7
1,674,280	-				+0.6
1,674,332	+				+0.2
1,674,354	+				+0.8
1,674,354	+				+0.1
1,674,418	-				+0.6
1,674,526	+				+0.2
1,674,536	+				+0.3
1,674,633	-		CA265_RS06780	0.12	+0.2
1,674,644	+		CA265_RS06780	0.12	-0.2
1,674,644	+		CA265_RS06780	0.12	-1.6
1,674,707	+		CA265_RS06780	0.14	-0.5
1,674,711	+		CA265_RS06780	0.14	+0.1
1,674,712	-		CA265_RS06780	0.14	+0.3
1,674,712	-		CA265_RS06780	0.14	-0.8
1,674,716	+		CA265_RS06780	0.14	+0.0
1,674,833	-		CA265_RS06780	0.17	+0.5
1,674,872	+		CA265_RS06780	0.18	+0.4
1,674,886	+		CA265_RS06780	0.18	-0.3
1,674,901	+		CA265_RS06780	0.19	-0.1
1,674,902	-		CA265_RS06780	0.19	-0.7
1,675,012	-		CA265_RS06780	0.21	+0.1
1,675,014	-		CA265_RS06780	0.21	-0.4
1,675,014	-		CA265_RS06780	0.21	-0.7
1,675,042	+		CA265_RS06780	0.22	+1.0
1,675,167	-		CA265_RS06780	0.25	+0.4
1,675,193	+		CA265_RS06780	0.26	-0.7
1,675,196	+		CA265_RS06780	0.26	+0.2
1,675,196	+		CA265_RS06780	0.26	-0.6
1,675,205	-		CA265_RS06780	0.26	+0.7
1,675,285	+		CA265_RS06780	0.28	+0.7
1,675,286	-		CA265_RS06780	0.28	-0.0
1,675,510	+		CA265_RS06780	0.34	-0.9
1,675,511	-		CA265_RS06780	0.34	+0.1
1,675,542	-		CA265_RS06780	0.35	-0.1
1,675,607	-		CA265_RS06780	0.36	+0.5
1,675,607	-		CA265_RS06780	0.36	+2.4
1,675,633	-		CA265_RS06780	0.37	-0.4
1,675,664	+		CA265_RS06780	0.38	+0.7
1,675,687	+		CA265_RS06780	0.38	+0.1
1,675,764	-		CA265_RS06780	0.40	-0.4
1,675,805	+		CA265_RS06780	0.41	-1.7
1,675,828	+		CA265_RS06780	0.42	-0.3
1,675,829	-		CA265_RS06780	0.42	-0.0
1,675,829	-		CA265_RS06780	0.42	+0.6
1,675,860	+		CA265_RS06780	0.42	+0.2
1,675,861	-		CA265_RS06780	0.42	-0.2
1,675,892	+		CA265_RS06780	0.43	-0.6
1,675,952	+		CA265_RS06780	0.45	-0.6
1,675,968	-		CA265_RS06780	0.45	+1.7
1,675,978	+		CA265_RS06780	0.45	+1.2
1,676,023	+		CA265_RS06780	0.46	+0.6
1,676,058	-		CA265_RS06780	0.47	-0.3
1,676,064	+		CA265_RS06780	0.47	-1.2
1,676,064	+		CA265_RS06780	0.47	+0.1
1,676,120	+		CA265_RS06780	0.49	+0.2
1,676,121	-		CA265_RS06780	0.49	-0.2
1,676,127	-		CA265_RS06780	0.49	-0.3
1,676,163	-		CA265_RS06780	0.50	+0.4
1,676,165	+		CA265_RS06780	0.50	-0.4
1,676,259	-		CA265_RS06780	0.52	+1.6
1,676,259	-		CA265_RS06780	0.52	+0.3
1,676,314	-		CA265_RS06780	0.54	+0.4
1,676,346	+		CA265_RS06780	0.54	+0.1
1,676,350	+		CA265_RS06780	0.54	-0.7
1,676,351	-		CA265_RS06780	0.54	-0.2
1,676,351	-		CA265_RS06780	0.54	-1.1
1,676,354	+		CA265_RS06780	0.55	-0.2
1,676,355	-		CA265_RS06780	0.55	+0.2
1,676,355	-		CA265_RS06780	0.55	-0.0
1,676,372	+		CA265_RS06780	0.55	-1.1
1,676,372	+		CA265_RS06780	0.55	-0.1
1,676,373	-		CA265_RS06780	0.55	+0.3
1,676,391	-		CA265_RS06780	0.55	-1.0
1,676,402	-		CA265_RS06780	0.56	-0.5
1,676,432	-		CA265_RS06780	0.56	-1.2
1,676,501	+		CA265_RS06780	0.58	-1.2
1,676,502	-		CA265_RS06780	0.58	+0.5
1,676,502	-		CA265_RS06780	0.58	+0.1
1,676,536	-		CA265_RS06780	0.59	+0.4
1,676,654	+		CA265_RS06780	0.62	+0.2
1,676,762	-		CA265_RS06780	0.65	-0.1
1,676,821	+		CA265_RS06780	0.66	+1.3
1,676,886	+		CA265_RS06780	0.68	+0.2
1,676,887	-		CA265_RS06780	0.68	-1.5
1,676,922	-		CA265_RS06780	0.69	-1.5
1,676,923	+		CA265_RS06780	0.69	+0.5
1,676,923	+		CA265_RS06780	0.69	-0.1
1,676,929	-		CA265_RS06780	0.69	-0.5
1,676,964	+		CA265_RS06780	0.70	-0.7
1,677,021	-		CA265_RS06780	0.71	-0.2
1,677,027	-		CA265_RS06780	0.71	-0.4
1,677,099	-		CA265_RS06780	0.73	-0.7
1,677,137	-		CA265_RS06780	0.74	-0.7
1,677,137	-		CA265_RS06780	0.74	-0.3
1,677,191	+		CA265_RS06780	0.75	+0.2
1,677,247	+		CA265_RS06780	0.77	+0.5
1,677,248	-		CA265_RS06780	0.77	-0.8
1,677,248	-		CA265_RS06780	0.77	+0.1
1,677,248	-		CA265_RS06780	0.77	-0.7
1,677,248	-		CA265_RS06780	0.77	+0.4
1,677,250	-		CA265_RS06780	0.77	-0.9
1,677,250	-		CA265_RS06780	0.77	-0.6
1,677,264	-		CA265_RS06780	0.77	-0.5
1,677,264	-		CA265_RS06780	0.77	-1.2
1,677,299	-		CA265_RS06780	0.78	+0.1
1,677,388	+		CA265_RS06780	0.80	-1.7
1,677,389	-		CA265_RS06780	0.80	-0.5
1,677,404	+		CA265_RS06780	0.80	+0.0
1,677,443	+		CA265_RS06780	0.81	+0.4
1,677,443	+		CA265_RS06780	0.81	+0.5
1,677,444	-		CA265_RS06780	0.81	-0.1
1,677,444	-		CA265_RS06780	0.81	+0.1
1,677,506	+		CA265_RS06780	0.83	+0.3
1,677,506	+		CA265_RS06780	0.83	+0.1
1,677,506	+		CA265_RS06780	0.83	+1.2
1,677,506	+		CA265_RS06780	0.83	-1.4
1,677,506	+		CA265_RS06780	0.83	-1.3
1,677,506	+		CA265_RS06780	0.83	-0.8
1,677,507	-		CA265_RS06780	0.83	-1.6
1,677,511	-		CA265_RS06780	0.83	-1.3
1,677,511	-		CA265_RS06780	0.83	+0.0
1,677,520	+		CA265_RS06780	0.83	+0.7
1,677,539	-		CA265_RS06780	0.84	-1.4
1,677,554	-		CA265_RS06780	0.84	-0.7
1,677,592	+		CA265_RS06780	0.85	-0.1
1,677,593	-		CA265_RS06780	0.85	+0.6
1,677,593	-		CA265_RS06780	0.85	-1.0
1,677,660	-		CA265_RS06780	0.87	-0.5
1,677,707	-		CA265_RS06780	0.88	-0.3
1,677,734	-		CA265_RS06780	0.89	-0.3
1,677,735	+		CA265_RS06780	0.89	+0.2
1,677,740	+		CA265_RS06780	0.89	+0.2
1,677,819	+				-1.3
1,677,833	+				-0.7
1,677,834	-				+2.3
1,677,932	+				-0.1
1,678,009	+				-1.1
1,678,013	+				+0.1
1,678,013	+				-0.2
1,678,014	-				+0.1
1,678,074	-				-1.4
1,678,126	-				-0.9
1,678,173	+				-0.7
1,678,192	-				+0.7
1,678,375	-				+0.6
1,678,382	+				-1.2
1,678,399	-				+0.9
1,678,414	-				-0.1
1,678,424	-				+0.4
1,678,424	-				-0.0
1,678,426	-				+0.5
1,678,435	-				-0.8
1,678,479	-		CA265_RS06785	0.13	-1.5
1,678,509	-		CA265_RS06785	0.14	-0.8
1,678,587	+		CA265_RS06785	0.20	-0.3
1,678,638	-		CA265_RS06785	0.23	-0.3
1,678,705	-		CA265_RS06785	0.27	-0.1
1,678,730	-		CA265_RS06785	0.29	+0.9
1,678,730	-		CA265_RS06785	0.29	-0.5
1,678,819	-		CA265_RS06785	0.35	+0.2
1,678,917	+		CA265_RS06785	0.41	+0.3
1,678,983	+		CA265_RS06785	0.45	+0.9
1,678,983	+		CA265_RS06785	0.45	-0.8
1,678,988	-		CA265_RS06785	0.46	-0.1
1,679,059	+		CA265_RS06785	0.50	-1.0
1,679,060	-		CA265_RS06785	0.50	-2.0
1,679,082	+		CA265_RS06785	0.52	-1.2