Experiment: R2A with Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03030 and CA265_RS03035 are separated by 142 nucleotides CA265_RS03035 and CA265_RS03040 are separated by 0 nucleotides CA265_RS03040 and CA265_RS03045 are separated by 139 nucleotides
CA265_RS03030: CA265_RS03030 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 753,356 to 755,314
_RS03030
CA265_RS03035: CA265_RS03035 - PadR family transcriptional regulator, at 755,457 to 755,795
_RS03035
CA265_RS03040: CA265_RS03040 - hypothetical protein, at 755,796 to 756,485
_RS03040
CA265_RS03045: CA265_RS03045 - hypothetical protein, at 756,625 to 757,551
_RS03045
Position (kb) 755
756 Strain fitness (log2 ratio) -1
0
1 at 755.313 kb on - strand at 755.313 kb on - strand at 755.340 kb on - strand at 755.445 kb on + strand at 755.477 kb on - strand at 755.535 kb on + strand, within CA265_RS03035 at 755.585 kb on - strand, within CA265_RS03035 at 755.591 kb on - strand, within CA265_RS03035 at 755.605 kb on + strand, within CA265_RS03035 at 755.606 kb on - strand, within CA265_RS03035 at 755.606 kb on - strand, within CA265_RS03035 at 755.654 kb on + strand, within CA265_RS03035 at 755.689 kb on - strand, within CA265_RS03035 at 755.699 kb on + strand, within CA265_RS03035 at 755.723 kb on - strand, within CA265_RS03035 at 755.726 kb on + strand, within CA265_RS03035 at 755.726 kb on + strand, within CA265_RS03035 at 755.869 kb on + strand, within CA265_RS03040 at 755.869 kb on + strand, within CA265_RS03040 at 755.870 kb on - strand, within CA265_RS03040 at 755.893 kb on + strand, within CA265_RS03040 at 755.893 kb on + strand, within CA265_RS03040 at 755.894 kb on - strand, within CA265_RS03040 at 755.937 kb on - strand, within CA265_RS03040 at 755.937 kb on - strand, within CA265_RS03040 at 756.033 kb on + strand, within CA265_RS03040 at 756.033 kb on + strand at 756.078 kb on - strand, within CA265_RS03040 at 756.078 kb on - strand, within CA265_RS03040 at 756.081 kb on + strand, within CA265_RS03040 at 756.081 kb on + strand, within CA265_RS03040 at 756.081 kb on + strand, within CA265_RS03040 at 756.089 kb on - strand, within CA265_RS03040 at 756.117 kb on + strand, within CA265_RS03040 at 756.137 kb on + strand, within CA265_RS03040 at 756.138 kb on - strand, within CA265_RS03040 at 756.138 kb on - strand, within CA265_RS03040 at 756.153 kb on + strand, within CA265_RS03040 at 756.182 kb on - strand, within CA265_RS03040 at 756.231 kb on + strand, within CA265_RS03040 at 756.273 kb on - strand, within CA265_RS03040 at 756.350 kb on + strand, within CA265_RS03040 at 756.350 kb on + strand, within CA265_RS03040 at 756.364 kb on + strand, within CA265_RS03040 at 756.400 kb on - strand, within CA265_RS03040 at 756.404 kb on + strand, within CA265_RS03040 at 756.413 kb on + strand, within CA265_RS03040 at 756.413 kb on + strand, within CA265_RS03040 at 756.416 kb on + strand, within CA265_RS03040 at 756.446 kb on + strand at 756.478 kb on - strand at 756.478 kb on - strand at 756.478 kb on - strand at 756.478 kb on - strand at 756.490 kb on - strand at 756.530 kb on + strand at 756.532 kb on + strand at 756.683 kb on - strand at 756.688 kb on - strand at 756.724 kb on - strand, within CA265_RS03045 at 756.756 kb on + strand, within CA265_RS03045
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml remove 755,313 - -0.5 755,313 - -0.9 755,340 - +0.7 755,445 + +0.4 755,477 - +1.1 755,535 + CA265_RS03035 0.23 -1.5 755,585 - CA265_RS03035 0.38 +0.7 755,591 - CA265_RS03035 0.40 +1.2 755,605 + CA265_RS03035 0.44 -0.9 755,606 - CA265_RS03035 0.44 +0.6 755,606 - CA265_RS03035 0.44 -1.0 755,654 + CA265_RS03035 0.58 +0.4 755,689 - CA265_RS03035 0.68 -1.1 755,699 + CA265_RS03035 0.71 -1.3 755,723 - CA265_RS03035 0.78 -1.0 755,726 + CA265_RS03035 0.79 -1.7 755,726 + CA265_RS03035 0.79 -0.9 755,869 + CA265_RS03040 0.11 -0.5 755,869 + CA265_RS03040 0.11 -0.4 755,870 - CA265_RS03040 0.11 -0.4 755,893 + CA265_RS03040 0.14 -0.3 755,893 + CA265_RS03040 0.14 -0.1 755,894 - CA265_RS03040 0.14 -0.7 755,937 - CA265_RS03040 0.20 +0.7 755,937 - CA265_RS03040 0.20 -1.5 756,033 + CA265_RS03040 0.34 +0.3 756,033 + -1.1 756,078 - CA265_RS03040 0.41 -0.6 756,078 - CA265_RS03040 0.41 +0.2 756,081 + CA265_RS03040 0.41 +0.3 756,081 + CA265_RS03040 0.41 +0.5 756,081 + CA265_RS03040 0.41 -0.0 756,089 - CA265_RS03040 0.42 +0.5 756,117 + CA265_RS03040 0.47 -0.4 756,137 + CA265_RS03040 0.49 -0.0 756,138 - CA265_RS03040 0.50 -0.2 756,138 - CA265_RS03040 0.50 -0.5 756,153 + CA265_RS03040 0.52 +0.3 756,182 - CA265_RS03040 0.56 -0.3 756,231 + CA265_RS03040 0.63 -0.2 756,273 - CA265_RS03040 0.69 +0.4 756,350 + CA265_RS03040 0.80 +1.2 756,350 + CA265_RS03040 0.80 +1.0 756,364 + CA265_RS03040 0.82 +0.3 756,400 - CA265_RS03040 0.88 -0.7 756,404 + CA265_RS03040 0.88 +0.6 756,413 + CA265_RS03040 0.89 +0.4 756,413 + CA265_RS03040 0.89 +1.3 756,416 + CA265_RS03040 0.90 +0.1 756,446 + +0.8 756,478 - -1.0 756,478 - +0.1 756,478 - -0.5 756,478 - -1.3 756,490 - +0.0 756,530 + +0.1 756,532 + -0.4 756,683 - +0.2 756,688 - +0.9 756,724 - CA265_RS03045 0.11 +0.7 756,756 + CA265_RS03045 0.14 +0.0
Or see this region's nucleotide sequence