Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02185

Experiment: R2A with Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02185 and CA265_RS02190 are separated by 8 nucleotidesCA265_RS02190 and CA265_RS02195 are separated by 1 nucleotides CA265_RS02185: CA265_RS02185 - type I glyceraldehyde-3-phosphate dehydrogenase, at 553,349 to 554,347 _RS02185 CA265_RS02190: CA265_RS02190 - hypothetical protein, at 554,356 to 555,198 _RS02190 CA265_RS02195: CA265_RS02195 - 6-phosphofructokinase, at 555,200 to 556,186 _RS02195 Position (kb) 553 554 555Strain fitness (log2 ratio) -2 -1 0 1at 552.355 kb on + strandat 552.374 kb on - strandat 552.380 kb on + strandat 552.389 kb on - strandat 552.431 kb on - strandat 552.452 kb on - strandat 552.455 kb on - strandat 552.455 kb on - strandat 552.515 kb on - strandat 552.562 kb on + strandat 552.599 kb on - strandat 552.618 kb on - strandat 552.655 kb on + strandat 552.657 kb on + strandat 552.671 kb on - strandat 552.692 kb on - strandat 552.809 kb on + strandat 552.841 kb on - strandat 552.918 kb on - strandat 553.291 kb on + strandat 553.313 kb on - strandat 553.316 kb on - strandat 553.316 kb on - strandat 554.362 kb on - strandat 554.367 kb on - strandat 554.486 kb on - strand, within CA265_RS02190at 554.650 kb on - strand, within CA265_RS02190at 554.835 kb on - strandat 554.927 kb on - strand, within CA265_RS02190at 555.118 kb on - strandat 555.121 kb on - strandat 555.202 kb on - strandat 555.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml
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552,355 + +0.9
552,374 - -0.8
552,380 + -0.5
552,389 - -0.3
552,431 - -1.4
552,452 - -0.3
552,455 - +0.0
552,455 - -0.2
552,515 - +0.1
552,562 + +0.2
552,599 - -1.9
552,618 - +0.5
552,655 + +0.7
552,657 + +0.7
552,671 - +0.1
552,692 - +0.1
552,809 + -0.0
552,841 - +0.5
552,918 - +0.8
553,291 + -2.2
553,313 - +0.3
553,316 - +0.2
553,316 - -1.2
554,362 - -1.9
554,367 - +1.0
554,486 - CA265_RS02190 0.15 -0.3
554,650 - CA265_RS02190 0.35 -0.8
554,835 - +0.4
554,927 - CA265_RS02190 0.68 -0.4
555,118 - -0.6
555,121 - +0.2
555,202 - +0.8
555,202 - -1.7

Or see this region's nucleotide sequence