Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01390

Experiment: R2A with Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01380 and CA265_RS01385 are separated by 187 nucleotidesCA265_RS01385 and CA265_RS01390 overlap by 17 nucleotidesCA265_RS01390 and CA265_RS01395 are separated by 39 nucleotidesCA265_RS01395 and CA265_RS01400 overlap by 4 nucleotides CA265_RS01380: CA265_RS01380 - hypothetical protein, at 348,256 to 348,438 _RS01380 CA265_RS01385: CA265_RS01385 - cytochrome C, at 348,626 to 349,393 _RS01385 CA265_RS01390: CA265_RS01390 - cytochrome c oxidase accessory protein CcoG, at 349,377 to 350,756 _RS01390 CA265_RS01395: CA265_RS01395 - hypothetical protein, at 350,796 to 351,269 _RS01395 CA265_RS01400: CA265_RS01400 - hypothetical protein, at 351,266 to 351,967 _RS01400 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 348.399 kb on + strand, within CA265_RS01380at 348.448 kb on - strandat 348.462 kb on + strandat 348.556 kb on + strandat 348.557 kb on - strandat 348.620 kb on - strandat 348.642 kb on + strandat 348.643 kb on - strandat 348.656 kb on + strandat 348.684 kb on + strandat 348.794 kb on + strand, within CA265_RS01385at 348.795 kb on - strand, within CA265_RS01385at 348.905 kb on + strand, within CA265_RS01385at 348.971 kb on + strand, within CA265_RS01385at 348.991 kb on + strand, within CA265_RS01385at 349.024 kb on + strand, within CA265_RS01385at 349.025 kb on - strand, within CA265_RS01385at 349.055 kb on - strand, within CA265_RS01385at 349.131 kb on - strand, within CA265_RS01385at 349.162 kb on - strand, within CA265_RS01385at 349.256 kb on - strand, within CA265_RS01385at 349.261 kb on - strand, within CA265_RS01385at 349.330 kb on - strandat 349.456 kb on - strandat 349.456 kb on - strandat 349.457 kb on + strandat 349.479 kb on + strandat 349.479 kb on + strandat 349.554 kb on - strand, within CA265_RS01390at 349.710 kb on - strand, within CA265_RS01390at 349.721 kb on - strand, within CA265_RS01390at 349.738 kb on - strand, within CA265_RS01390at 349.875 kb on + strand, within CA265_RS01390at 349.876 kb on - strand, within CA265_RS01390at 349.894 kb on + strand, within CA265_RS01390at 349.901 kb on + strand, within CA265_RS01390at 349.902 kb on - strand, within CA265_RS01390at 349.909 kb on + strand, within CA265_RS01390at 349.969 kb on + strand, within CA265_RS01390at 349.969 kb on + strand, within CA265_RS01390at 349.989 kb on + strand, within CA265_RS01390at 350.025 kb on + strand, within CA265_RS01390at 350.132 kb on - strand, within CA265_RS01390at 350.187 kb on - strand, within CA265_RS01390at 350.187 kb on - strand, within CA265_RS01390at 350.204 kb on + strand, within CA265_RS01390at 350.205 kb on - strand, within CA265_RS01390at 350.264 kb on + strand, within CA265_RS01390at 350.265 kb on - strand, within CA265_RS01390at 350.333 kb on + strand, within CA265_RS01390at 350.359 kb on - strand, within CA265_RS01390at 350.369 kb on - strand, within CA265_RS01390at 350.381 kb on - strand, within CA265_RS01390at 350.420 kb on + strand, within CA265_RS01390at 350.456 kb on - strand, within CA265_RS01390at 350.456 kb on - strand, within CA265_RS01390at 350.555 kb on + strand, within CA265_RS01390at 350.633 kb on - strandat 350.711 kb on + strandat 350.720 kb on + strandat 350.720 kb on + strandat 350.840 kb on + strandat 350.861 kb on - strand, within CA265_RS01395at 350.877 kb on - strand, within CA265_RS01395at 350.901 kb on - strand, within CA265_RS01395at 350.912 kb on + strand, within CA265_RS01395at 350.913 kb on - strand, within CA265_RS01395at 350.924 kb on - strand, within CA265_RS01395at 350.976 kb on + strand, within CA265_RS01395at 350.978 kb on + strand, within CA265_RS01395at 351.008 kb on + strand, within CA265_RS01395at 351.009 kb on - strand, within CA265_RS01395at 351.041 kb on + strand, within CA265_RS01395at 351.074 kb on + strand, within CA265_RS01395at 351.074 kb on + strand, within CA265_RS01395at 351.085 kb on - strand, within CA265_RS01395at 351.098 kb on - strand, within CA265_RS01395at 351.113 kb on + strand, within CA265_RS01395at 351.128 kb on + strand, within CA265_RS01395at 351.265 kb on + strandat 351.328 kb on - strandat 351.343 kb on + strand, within CA265_RS01400at 351.426 kb on + strand, within CA265_RS01400at 351.427 kb on - strand, within CA265_RS01400at 351.429 kb on - strand, within CA265_RS01400at 351.450 kb on + strand, within CA265_RS01400at 351.460 kb on - strand, within CA265_RS01400at 351.481 kb on + strand, within CA265_RS01400at 351.524 kb on - strand, within CA265_RS01400at 351.558 kb on - strand, within CA265_RS01400at 351.585 kb on + strand, within CA265_RS01400at 351.591 kb on + strand, within CA265_RS01400at 351.591 kb on + strand, within CA265_RS01400at 351.594 kb on + strand, within CA265_RS01400at 351.595 kb on - strand, within CA265_RS01400at 351.619 kb on + strand, within CA265_RS01400at 351.624 kb on + strand, within CA265_RS01400at 351.742 kb on + strand, within CA265_RS01400at 351.748 kb on + strand, within CA265_RS01400

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml
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348,399 + CA265_RS01380 0.78 -0.5
348,448 - +0.1
348,462 + -1.0
348,556 + +0.6
348,557 - +0.3
348,620 - +0.3
348,642 + -0.3
348,643 - +0.1
348,656 + -0.1
348,684 + -0.3
348,794 + CA265_RS01385 0.22 -0.7
348,795 - CA265_RS01385 0.22 +1.8
348,905 + CA265_RS01385 0.36 +0.7
348,971 + CA265_RS01385 0.45 -0.8
348,991 + CA265_RS01385 0.48 -2.1
349,024 + CA265_RS01385 0.52 +0.0
349,025 - CA265_RS01385 0.52 +0.2
349,055 - CA265_RS01385 0.56 +0.3
349,131 - CA265_RS01385 0.66 -0.2
349,162 - CA265_RS01385 0.70 -0.9
349,256 - CA265_RS01385 0.82 +0.1
349,261 - CA265_RS01385 0.83 -0.8
349,330 - -0.1
349,456 - -0.5
349,456 - -0.5
349,457 + -1.2
349,479 + +0.4
349,479 + -1.0
349,554 - CA265_RS01390 0.13 -0.3
349,710 - CA265_RS01390 0.24 -0.4
349,721 - CA265_RS01390 0.25 -1.1
349,738 - CA265_RS01390 0.26 -0.6
349,875 + CA265_RS01390 0.36 +0.2
349,876 - CA265_RS01390 0.36 -0.8
349,894 + CA265_RS01390 0.37 +0.6
349,901 + CA265_RS01390 0.38 -0.9
349,902 - CA265_RS01390 0.38 -0.9
349,909 + CA265_RS01390 0.39 -0.4
349,969 + CA265_RS01390 0.43 -0.5
349,969 + CA265_RS01390 0.43 -0.9
349,989 + CA265_RS01390 0.44 +0.1
350,025 + CA265_RS01390 0.47 -0.6
350,132 - CA265_RS01390 0.55 -0.6
350,187 - CA265_RS01390 0.59 -1.1
350,187 - CA265_RS01390 0.59 +0.4
350,204 + CA265_RS01390 0.60 -1.1
350,205 - CA265_RS01390 0.60 +1.0
350,264 + CA265_RS01390 0.64 +0.1
350,265 - CA265_RS01390 0.64 -1.1
350,333 + CA265_RS01390 0.69 -0.2
350,359 - CA265_RS01390 0.71 -0.3
350,369 - CA265_RS01390 0.72 -0.1
350,381 - CA265_RS01390 0.73 -0.5
350,420 + CA265_RS01390 0.76 +0.2
350,456 - CA265_RS01390 0.78 +0.1
350,456 - CA265_RS01390 0.78 +0.8
350,555 + CA265_RS01390 0.85 -0.9
350,633 - -0.4
350,711 + -0.6
350,720 + -0.8
350,720 + +0.3
350,840 + -0.2
350,861 - CA265_RS01395 0.14 +0.1
350,877 - CA265_RS01395 0.17 +0.5
350,901 - CA265_RS01395 0.22 -0.7
350,912 + CA265_RS01395 0.24 -0.0
350,913 - CA265_RS01395 0.25 -1.0
350,924 - CA265_RS01395 0.27 -2.3
350,976 + CA265_RS01395 0.38 -0.2
350,978 + CA265_RS01395 0.38 +0.5
351,008 + CA265_RS01395 0.45 -0.6
351,009 - CA265_RS01395 0.45 -0.9
351,041 + CA265_RS01395 0.52 -0.0
351,074 + CA265_RS01395 0.59 -0.7
351,074 + CA265_RS01395 0.59 +0.4
351,085 - CA265_RS01395 0.61 -0.4
351,098 - CA265_RS01395 0.64 -0.5
351,113 + CA265_RS01395 0.67 +0.4
351,128 + CA265_RS01395 0.70 -0.3
351,265 + -0.2
351,328 - -1.3
351,343 + CA265_RS01400 0.11 +0.7
351,426 + CA265_RS01400 0.23 -0.4
351,427 - CA265_RS01400 0.23 +0.3
351,429 - CA265_RS01400 0.23 -0.2
351,450 + CA265_RS01400 0.26 +1.2
351,460 - CA265_RS01400 0.28 +0.3
351,481 + CA265_RS01400 0.31 +0.3
351,524 - CA265_RS01400 0.37 -0.0
351,558 - CA265_RS01400 0.42 -0.5
351,585 + CA265_RS01400 0.45 -0.2
351,591 + CA265_RS01400 0.46 -0.8
351,591 + CA265_RS01400 0.46 -0.1
351,594 + CA265_RS01400 0.47 -0.0
351,595 - CA265_RS01400 0.47 -1.1
351,619 + CA265_RS01400 0.50 -0.6
351,624 + CA265_RS01400 0.51 -0.3
351,742 + CA265_RS01400 0.68 -0.2
351,748 + CA265_RS01400 0.69 -0.0

Or see this region's nucleotide sequence