Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00385

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
85,747	-		CA265_RS00375	0.51	-0.5
85,764	-		CA265_RS00375	0.53	+0.9
85,803	-		CA265_RS00375	0.57	-0.2
85,858	+		CA265_RS00375	0.64	-0.5
85,858	+		CA265_RS00375	0.64	-0.1
85,858	+		CA265_RS00375	0.64	+1.0
85,859	-		CA265_RS00375	0.64	-0.2
85,900	+		CA265_RS00375	0.69	-0.2
85,900	+		CA265_RS00375	0.69	-0.2
85,911	+		CA265_RS00375	0.70	-0.3
85,912	-		CA265_RS00375	0.70	-0.7
86,010	+		CA265_RS00375	0.82	-0.2
86,010	+		CA265_RS00375	0.82	+0.0
86,014	+		CA265_RS00375	0.82	-0.4
86,014	+		CA265_RS00375	0.82	+0.7
86,015	-		CA265_RS00375	0.82	+0.5
86,057	+		CA265_RS00375	0.87	-0.6
86,061	-		CA265_RS00375	0.88	-3.8
86,063	+		CA265_RS00375	0.88	-0.2
86,064	-		CA265_RS00375	0.88	-0.2
86,065	+		CA265_RS00375	0.88	-0.2
86,066	-		CA265_RS00375	0.88	+0.5
86,082	-				-1.2
86,082	-				-0.5
86,116	-				+2.0
86,157	+				+1.0
86,157	+				+0.5
86,167	+				+0.1
86,167	+				-0.4
86,167	+				-0.3
86,225	+		CA265_RS00380	0.17	-0.3
86,226	-		CA265_RS00380	0.17	-0.1
86,226	-		CA265_RS00380	0.17	-0.9
86,230	+		CA265_RS00380	0.18	-0.7
86,231	-		CA265_RS00380	0.19	+0.1
86,390	-		CA265_RS00380	0.74	-3.5
86,390	-		CA265_RS00380	0.74	-4.0
86,523	+				+0.8
86,523	+				-0.2
86,524	-				+0.1
86,524	-				-0.2
86,524	-				+0.2
86,654	+				-1.4
86,654	+				-0.1
86,659	-				-0.2
86,854	+		CA265_RS00385	0.24	-2.4
86,858	+		CA265_RS00385	0.25	-0.6
86,858	+		CA265_RS00385	0.25	+0.2
86,880	-		CA265_RS00385	0.28	+0.4
86,914	-		CA265_RS00385	0.32	-2.6
86,923	-		CA265_RS00385	0.33	+0.3
86,979	-		CA265_RS00385	0.40	-1.3
86,979	-		CA265_RS00385	0.40	+0.3
86,997	+		CA265_RS00385	0.42	+0.3
87,166	+		CA265_RS00385	0.64	+0.0
87,173	+		CA265_RS00385	0.64	-0.4
87,279	+		CA265_RS00385	0.78	-0.7
87,280	-		CA265_RS00385	0.78	-1.3
87,280	-		CA265_RS00385	0.78	-0.6
87,306	-		CA265_RS00385	0.81	-0.6
87,378	+				+0.4
87,379	-				-0.4
87,447	-				-0.4
87,509	+				+0.3
87,557	+		CA265_RS00390	0.14	+0.6
87,613	+		CA265_RS00390	0.25	+0.5
87,614	-		CA265_RS00390	0.25	-0.2
87,618	-		CA265_RS00390	0.26	-0.6
87,626	-		CA265_RS00390	0.27	+0.3
87,629	-		CA265_RS00390	0.28	-1.0
87,652	+		CA265_RS00390	0.33	+2.9
87,652	+		CA265_RS00390	0.33	+0.1
87,655	+		CA265_RS00390	0.33	-0.5
87,655	+		CA265_RS00390	0.33	+0.3
87,656	-		CA265_RS00390	0.33	-0.3
87,676	-		CA265_RS00390	0.37	-1.7
87,687	+		CA265_RS00390	0.39	+1.1
87,729	+		CA265_RS00390	0.48	+0.5
87,730	-		CA265_RS00390	0.48	+0.2
87,748	-		CA265_RS00390	0.51	-0.3
87,756	+		CA265_RS00390	0.53	+1.0
87,769	-		CA265_RS00390	0.56	-1.5
87,809	+		CA265_RS00390	0.64	+0.1
87,852	-		CA265_RS00390	0.72	-0.3
87,852	-		CA265_RS00390	0.72	-0.4
87,892	-		CA265_RS00390	0.80	+0.3
87,916	-		CA265_RS00390	0.85	-0.7
87,940	-		CA265_RS00390	0.89	+0.2
88,003	+				+1.2
88,048	+				-1.2
88,158	-		CA265_RS00395	0.40	-0.9
88,173	-		CA265_RS00395	0.45	+1.1
88,199	+		CA265_RS00395	0.54	-0.5
88,227	+		CA265_RS00395	0.65	-0.3
88,317	+				-2.1
88,317	+				-2.0
88,318	-				+0.1
88,318	-				-0.9
88,341	-				-0.5
88,355	-				-0.5
88,380	-				-0.3
88,387	+				-1.8
88,388	-				+0.8