Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26190 and BPHYT_RS26195 are separated by 152 nucleotides BPHYT_RS26195 and BPHYT_RS26200 are separated by 3 nucleotides BPHYT_RS26200 and BPHYT_RS26205 are separated by 13 nucleotides
BPHYT_RS26190: BPHYT_RS26190 - lysine transporter LysE, at 1,447,925 to 1,448,557
_RS26190
BPHYT_RS26195: BPHYT_RS26195 - transporter, at 1,448,710 to 1,448,970
_RS26195
BPHYT_RS26200: BPHYT_RS26200 - acetate kinase, at 1,448,974 to 1,450,134
_RS26200
BPHYT_RS26205: BPHYT_RS26205 - phosphoketolase, at 1,450,148 to 1,452,541
_RS26205
Position (kb) 1448
1449
1450
1451 Strain fitness (log2 ratio) -1
0
1 at 1448.166 kb on + strand, within BPHYT_RS26190 at 1448.167 kb on - strand, within BPHYT_RS26190 at 1448.301 kb on + strand, within BPHYT_RS26190 at 1448.478 kb on + strand, within BPHYT_RS26190 at 1448.478 kb on + strand, within BPHYT_RS26190 at 1448.600 kb on - strand at 1448.686 kb on - strand at 1449.053 kb on - strand at 1449.381 kb on - strand, within BPHYT_RS26200 at 1449.591 kb on - strand, within BPHYT_RS26200 at 1450.207 kb on - strand at 1450.410 kb on + strand, within BPHYT_RS26205 at 1450.852 kb on + strand, within BPHYT_RS26205 at 1450.853 kb on - strand, within BPHYT_RS26205 at 1450.856 kb on + strand, within BPHYT_RS26205 at 1450.874 kb on - strand, within BPHYT_RS26205
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 1,448,166 + BPHYT_RS26190 0.38 -0.2 1,448,167 - BPHYT_RS26190 0.38 -0.5 1,448,301 + BPHYT_RS26190 0.59 -0.1 1,448,478 + BPHYT_RS26190 0.87 -0.1 1,448,478 + BPHYT_RS26190 0.87 -1.2 1,448,600 - -0.3 1,448,686 - +0.6 1,449,053 - +1.0 1,449,381 - BPHYT_RS26200 0.35 +0.9 1,449,591 - BPHYT_RS26200 0.53 +0.0 1,450,207 - +0.0 1,450,410 + BPHYT_RS26205 0.11 -0.0 1,450,852 + BPHYT_RS26205 0.29 -1.6 1,450,853 - BPHYT_RS26205 0.29 -0.5 1,450,856 + BPHYT_RS26205 0.30 -0.3 1,450,874 - BPHYT_RS26205 0.30 -0.5
Or see this region's nucleotide sequence