Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03795

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03790 and BPHYT_RS03795 are separated by 326 nucleotidesBPHYT_RS03795 and BPHYT_RS03800 are separated by 82 nucleotides BPHYT_RS03790: BPHYT_RS03790 - diguanylate phosphodiesterase, at 854,800 to 855,633 _RS03790 BPHYT_RS03795: BPHYT_RS03795 - 4-hydroxybenzoate transporter, at 855,960 to 857,324 _RS03795 BPHYT_RS03800: BPHYT_RS03800 - homogentisate 1,2-dioxygenase, at 857,407 to 858,705 _RS03800 Position (kb) 855 856 857 858Strain fitness (log2 ratio) -2 -1 0 1at 855.072 kb on - strand, within BPHYT_RS03790at 855.080 kb on + strand, within BPHYT_RS03790at 855.095 kb on + strand, within BPHYT_RS03790at 855.207 kb on - strand, within BPHYT_RS03790at 855.247 kb on + strand, within BPHYT_RS03790at 855.358 kb on + strand, within BPHYT_RS03790at 855.358 kb on + strand, within BPHYT_RS03790at 855.359 kb on - strand, within BPHYT_RS03790at 855.495 kb on - strand, within BPHYT_RS03790at 855.635 kb on + strandat 855.635 kb on + strandat 855.635 kb on + strandat 855.636 kb on - strandat 855.636 kb on - strandat 855.636 kb on - strandat 855.636 kb on - strandat 855.636 kb on - strandat 855.636 kb on - strandat 855.636 kb on - strandat 855.642 kb on - strandat 855.676 kb on + strandat 855.677 kb on - strandat 855.714 kb on + strandat 855.715 kb on - strandat 855.715 kb on - strandat 855.715 kb on - strandat 855.848 kb on + strandat 855.848 kb on + strandat 855.849 kb on - strandat 855.849 kb on - strandat 855.871 kb on + strandat 855.871 kb on + strandat 855.872 kb on - strandat 855.872 kb on - strandat 855.872 kb on - strandat 855.872 kb on - strandat 856.110 kb on + strand, within BPHYT_RS03795at 856.110 kb on + strand, within BPHYT_RS03795at 856.110 kb on + strand, within BPHYT_RS03795at 856.448 kb on + strand, within BPHYT_RS03795at 856.794 kb on + strand, within BPHYT_RS03795at 857.097 kb on + strand, within BPHYT_RS03795at 857.097 kb on + strand, within BPHYT_RS03795at 857.355 kb on + strandat 857.356 kb on - strandat 857.507 kb on - strandat 857.562 kb on + strand, within BPHYT_RS03800at 857.607 kb on + strand, within BPHYT_RS03800at 857.607 kb on + strand, within BPHYT_RS03800at 857.608 kb on - strand, within BPHYT_RS03800at 857.798 kb on - strand, within BPHYT_RS03800at 857.833 kb on + strand, within BPHYT_RS03800at 857.833 kb on + strand, within BPHYT_RS03800at 857.989 kb on + strand, within BPHYT_RS03800at 858.094 kb on + strand, within BPHYT_RS03800at 858.202 kb on + strand, within BPHYT_RS03800at 858.217 kb on + strand, within BPHYT_RS03800at 858.217 kb on + strand, within BPHYT_RS03800at 858.218 kb on - strand, within BPHYT_RS03800at 858.321 kb on + strand, within BPHYT_RS03800at 858.322 kb on - strand, within BPHYT_RS03800

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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855,072 - BPHYT_RS03790 0.33 +0.1
855,080 + BPHYT_RS03790 0.34 +0.5
855,095 + BPHYT_RS03790 0.35 -0.3
855,207 - BPHYT_RS03790 0.49 +0.5
855,247 + BPHYT_RS03790 0.54 +0.0
855,358 + BPHYT_RS03790 0.67 -0.4
855,358 + BPHYT_RS03790 0.67 +0.4
855,359 - BPHYT_RS03790 0.67 -0.3
855,495 - BPHYT_RS03790 0.83 -0.1
855,635 + -0.4
855,635 + -1.6
855,635 + -0.2
855,636 - -0.2
855,636 - +0.9
855,636 - -0.5
855,636 - -0.0
855,636 - -0.1
855,636 - +1.2
855,636 - -0.0
855,642 - -0.4
855,676 + +0.3
855,677 - -0.1
855,714 + +0.3
855,715 - +0.1
855,715 - -2.4
855,715 - +0.0
855,848 + +0.0
855,848 + +0.2
855,849 - -0.4
855,849 - -0.2
855,871 + -0.6
855,871 + -0.6
855,872 - -0.5
855,872 - -0.8
855,872 - -0.0
855,872 - -0.0
856,110 + BPHYT_RS03795 0.11 -0.8
856,110 + BPHYT_RS03795 0.11 -0.4
856,110 + BPHYT_RS03795 0.11 -1.1
856,448 + BPHYT_RS03795 0.36 -0.3
856,794 + BPHYT_RS03795 0.61 -0.1
857,097 + BPHYT_RS03795 0.83 +0.1
857,097 + BPHYT_RS03795 0.83 +0.2
857,355 + +0.0
857,356 - -0.4
857,507 - +0.1
857,562 + BPHYT_RS03800 0.12 -0.4
857,607 + BPHYT_RS03800 0.15 +1.0
857,607 + BPHYT_RS03800 0.15 +0.2
857,608 - BPHYT_RS03800 0.15 -0.4
857,798 - BPHYT_RS03800 0.30 +0.5
857,833 + BPHYT_RS03800 0.33 -0.6
857,833 + BPHYT_RS03800 0.33 +0.0
857,989 + BPHYT_RS03800 0.45 -0.5
858,094 + BPHYT_RS03800 0.53 +0.1
858,202 + BPHYT_RS03800 0.61 -1.1
858,217 + BPHYT_RS03800 0.62 -0.3
858,217 + BPHYT_RS03800 0.62 -0.4
858,218 - BPHYT_RS03800 0.62 -0.1
858,321 + BPHYT_RS03800 0.70 -0.9
858,322 - BPHYT_RS03800 0.70 -0.4

Or see this region's nucleotide sequence