Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02310

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02305 and BPHYT_RS02310 are separated by 95 nucleotidesBPHYT_RS02310 and BPHYT_RS02315 are separated by 286 nucleotidesBPHYT_RS02315 and BPHYT_RS02320 are separated by 118 nucleotides BPHYT_RS02305: BPHYT_RS02305 - methionine synthase, at 527,142 to 529,850 _RS02305 BPHYT_RS02310: BPHYT_RS02310 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 529,946 to 531,016 _RS02310 BPHYT_RS02315: BPHYT_RS02315 - hypothetical protein, at 531,303 to 531,560 _RS02315 BPHYT_RS02320: BPHYT_RS02320 - 3-oxoadipate enol-lactonase, at 531,679 to 532,467 _RS02320 Position (kb) 529 530 531 532Strain fitness (log2 ratio) -2 -1 0 1 2 3at 529.048 kb on + strand, within BPHYT_RS02305at 529.049 kb on - strand, within BPHYT_RS02305at 529.109 kb on - strand, within BPHYT_RS02305at 529.386 kb on - strand, within BPHYT_RS02305at 529.587 kb on - strandat 529.864 kb on + strandat 529.864 kb on + strandat 529.865 kb on - strandat 529.865 kb on - strandat 529.865 kb on - strandat 529.886 kb on - strandat 530.020 kb on + strandat 530.021 kb on - strandat 530.060 kb on + strand, within BPHYT_RS02310at 530.061 kb on - strand, within BPHYT_RS02310at 530.101 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.207 kb on - strand, within BPHYT_RS02310at 530.207 kb on - strand, within BPHYT_RS02310at 530.208 kb on + strand, within BPHYT_RS02310at 530.208 kb on + strand, within BPHYT_RS02310at 530.208 kb on + strand, within BPHYT_RS02310at 530.208 kb on + strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.487 kb on + strand, within BPHYT_RS02310at 530.487 kb on + strand, within BPHYT_RS02310at 530.491 kb on - strand, within BPHYT_RS02310at 530.554 kb on + strand, within BPHYT_RS02310at 530.619 kb on + strand, within BPHYT_RS02310at 530.884 kb on - strand, within BPHYT_RS02310at 531.203 kb on - strandat 531.203 kb on - strandat 531.220 kb on + strandat 531.220 kb on + strandat 531.221 kb on - strandat 531.243 kb on + strandat 531.244 kb on - strandat 531.269 kb on + strandat 531.270 kb on - strandat 531.270 kb on - strandat 531.270 kb on - strandat 531.270 kb on - strandat 531.361 kb on - strand, within BPHYT_RS02315at 531.439 kb on + strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.532 kb on + strand, within BPHYT_RS02315at 531.532 kb on + strand, within BPHYT_RS02315at 531.533 kb on - strand, within BPHYT_RS02315at 531.533 kb on - strand, within BPHYT_RS02315at 531.547 kb on + strandat 531.547 kb on + strandat 531.548 kb on - strandat 531.573 kb on + strandat 531.574 kb on - strandat 531.606 kb on + strandat 531.606 kb on + strandat 531.607 kb on - strandat 531.617 kb on + strandat 531.618 kb on - strandat 531.680 kb on + strandat 531.796 kb on + strand, within BPHYT_RS02320at 531.797 kb on - strand, within BPHYT_RS02320at 531.797 kb on - strand, within BPHYT_RS02320at 531.807 kb on + strand, within BPHYT_RS02320at 531.807 kb on + strand, within BPHYT_RS02320at 531.808 kb on - strand, within BPHYT_RS02320at 531.808 kb on - strand, within BPHYT_RS02320at 531.808 kb on - strand, within BPHYT_RS02320at 531.879 kb on + strand, within BPHYT_RS02320at 531.880 kb on - strand, within BPHYT_RS02320at 531.886 kb on + strand, within BPHYT_RS02320at 531.886 kb on + strand, within BPHYT_RS02320at 531.886 kb on + strand, within BPHYT_RS02320at 531.923 kb on + strand, within BPHYT_RS02320at 531.924 kb on - strand, within BPHYT_RS02320at 531.949 kb on + strand, within BPHYT_RS02320at 531.949 kb on + strand, within BPHYT_RS02320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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529,048 + BPHYT_RS02305 0.70 -0.2
529,049 - BPHYT_RS02305 0.70 -0.9
529,109 - BPHYT_RS02305 0.73 -0.5
529,386 - BPHYT_RS02305 0.83 -0.2
529,587 - -0.5
529,864 + -0.1
529,864 + -0.1
529,865 - -0.2
529,865 - +0.2
529,865 - +1.2
529,886 - +0.3
530,020 + -0.4
530,021 - -0.7
530,060 + BPHYT_RS02310 0.11 -0.4
530,061 - BPHYT_RS02310 0.11 -0.2
530,101 + BPHYT_RS02310 0.14 -1.0
530,175 + BPHYT_RS02310 0.21 +0.3
530,175 + BPHYT_RS02310 0.21 -0.6
530,175 + BPHYT_RS02310 0.21 -1.5
530,175 + BPHYT_RS02310 0.21 -0.9
530,175 + BPHYT_RS02310 0.21 -0.6
530,175 + BPHYT_RS02310 0.21 -0.3
530,175 + BPHYT_RS02310 0.21 -1.2
530,176 - BPHYT_RS02310 0.21 -0.6
530,176 - BPHYT_RS02310 0.21 -1.5
530,176 - BPHYT_RS02310 0.21 -1.9
530,176 - BPHYT_RS02310 0.21 -0.7
530,176 - BPHYT_RS02310 0.21 -0.3
530,207 - BPHYT_RS02310 0.24 -0.6
530,207 - BPHYT_RS02310 0.24 -0.5
530,208 + BPHYT_RS02310 0.24 -0.3
530,208 + BPHYT_RS02310 0.24 -0.8
530,208 + BPHYT_RS02310 0.24 -0.7
530,208 + BPHYT_RS02310 0.24 -0.8
530,209 - BPHYT_RS02310 0.25 -0.3
530,209 - BPHYT_RS02310 0.25 -1.2
530,209 - BPHYT_RS02310 0.25 -0.9
530,209 - BPHYT_RS02310 0.25 -0.4
530,209 - BPHYT_RS02310 0.25 -0.2
530,487 + BPHYT_RS02310 0.51 -0.9
530,487 + BPHYT_RS02310 0.51 -0.8
530,491 - BPHYT_RS02310 0.51 +0.6
530,554 + BPHYT_RS02310 0.57 -0.3
530,619 + BPHYT_RS02310 0.63 -0.5
530,884 - BPHYT_RS02310 0.88 -1.5
531,203 - +0.3
531,203 - +0.4
531,220 + -0.4
531,220 + -1.2
531,221 - +0.1
531,243 + -0.1
531,244 - -0.5
531,269 + -0.1
531,270 - +0.6
531,270 - -1.6
531,270 - -0.1
531,270 - +0.2
531,361 - BPHYT_RS02315 0.22 -0.8
531,439 + BPHYT_RS02315 0.53 +0.2
531,440 - BPHYT_RS02315 0.53 +0.1
531,440 - BPHYT_RS02315 0.53 -0.1
531,440 - BPHYT_RS02315 0.53 -0.2
531,440 - BPHYT_RS02315 0.53 -0.3
531,440 - BPHYT_RS02315 0.53 +0.5
531,440 - BPHYT_RS02315 0.53 -0.1
531,532 + BPHYT_RS02315 0.89 -1.4
531,532 + BPHYT_RS02315 0.89 -0.4
531,533 - BPHYT_RS02315 0.89 -0.2
531,533 - BPHYT_RS02315 0.89 -0.4
531,547 + +0.2
531,547 + -1.5
531,548 - +1.2
531,573 + -0.8
531,574 - +0.5
531,606 + -0.1
531,606 + -0.5
531,607 - -0.6
531,617 + -0.6
531,618 - -0.2
531,680 + -1.6
531,796 + BPHYT_RS02320 0.15 -0.1
531,797 - BPHYT_RS02320 0.15 +0.8
531,797 - BPHYT_RS02320 0.15 +0.0
531,807 + BPHYT_RS02320 0.16 -0.3
531,807 + BPHYT_RS02320 0.16 +0.4
531,808 - BPHYT_RS02320 0.16 +3.5
531,808 - BPHYT_RS02320 0.16 +0.3
531,808 - BPHYT_RS02320 0.16 +0.4
531,879 + BPHYT_RS02320 0.25 -0.4
531,880 - BPHYT_RS02320 0.25 +0.3
531,886 + BPHYT_RS02320 0.26 +0.0
531,886 + BPHYT_RS02320 0.26 -0.2
531,886 + BPHYT_RS02320 0.26 +0.6
531,923 + BPHYT_RS02320 0.31 -0.1
531,924 - BPHYT_RS02320 0.31 +0.2
531,949 + BPHYT_RS02320 0.34 -0.0
531,949 + BPHYT_RS02320 0.34 +0.0

Or see this region's nucleotide sequence