Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21760 and AO356_21765 are separated by 105 nucleotides AO356_21765 and AO356_21770 overlap by 8 nucleotides AO356_21770 and AO356_21775 are separated by 24 nucleotides AO356_21775 and AO356_21780 are separated by 235 nucleotides
AO356_21760: AO356_21760 - oxidoreductase, at 4,871,167 to 4,872,138
_21760
AO356_21765: AO356_21765 - GntR family transcriptional regulator, at 4,872,244 to 4,873,002
_21765
AO356_21770: AO356_21770 - oxidoreductase, at 4,872,995 to 4,874,725
_21770
AO356_21775: AO356_21775 - 4Fe-4S ferredoxin, at 4,874,750 to 4,874,995
_21775
AO356_21780: AO356_21780 - nitrate ABC transporter substrate-binding protein, at 4,875,231 to 4,876,637
_21780
Position (kb) 4872
4873
4874
4875 Strain fitness (log2 ratio) -2
-1
0
1 at 4872.032 kb on + strand, within AO356_21760 at 4872.032 kb on + strand, within AO356_21760 at 4872.032 kb on + strand, within AO356_21760 at 4872.033 kb on - strand, within AO356_21760 at 4872.158 kb on - strand at 4872.162 kb on + strand at 4872.162 kb on + strand at 4872.162 kb on + strand at 4872.163 kb on - strand at 4872.163 kb on - strand at 4872.163 kb on - strand at 4872.176 kb on + strand at 4872.177 kb on - strand at 4872.276 kb on - strand at 4872.691 kb on + strand, within AO356_21765 at 4872.691 kb on + strand, within AO356_21765 at 4872.931 kb on + strand at 4872.931 kb on + strand at 4872.931 kb on + strand at 4872.932 kb on - strand at 4872.932 kb on - strand at 4872.935 kb on - strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.001 kb on - strand at 4873.023 kb on - strand at 4873.023 kb on - strand at 4873.208 kb on + strand, within AO356_21770 at 4873.208 kb on + strand, within AO356_21770 at 4873.209 kb on - strand, within AO356_21770 at 4873.262 kb on + strand, within AO356_21770 at 4873.262 kb on + strand, within AO356_21770 at 4873.263 kb on - strand, within AO356_21770 at 4873.263 kb on - strand, within AO356_21770 at 4873.268 kb on + strand, within AO356_21770 at 4873.268 kb on + strand, within AO356_21770 at 4873.268 kb on + strand, within AO356_21770 at 4873.269 kb on - strand, within AO356_21770 at 4873.379 kb on + strand, within AO356_21770 at 4873.379 kb on + strand, within AO356_21770 at 4873.379 kb on + strand, within AO356_21770 at 4873.379 kb on + strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.635 kb on - strand, within AO356_21770 at 4873.665 kb on - strand, within AO356_21770 at 4873.676 kb on + strand, within AO356_21770 at 4873.739 kb on + strand, within AO356_21770 at 4873.739 kb on + strand, within AO356_21770 at 4873.740 kb on - strand, within AO356_21770 at 4873.760 kb on + strand, within AO356_21770 at 4873.760 kb on + strand, within AO356_21770 at 4873.760 kb on + strand, within AO356_21770 at 4873.760 kb on + strand, within AO356_21770 at 4873.761 kb on - strand, within AO356_21770 at 4873.761 kb on - strand, within AO356_21770 at 4873.761 kb on - strand, within AO356_21770 at 4873.784 kb on + strand, within AO356_21770 at 4873.826 kb on + strand, within AO356_21770 at 4873.827 kb on - strand, within AO356_21770 at 4874.111 kb on + strand, within AO356_21770 at 4874.112 kb on - strand, within AO356_21770 at 4874.147 kb on + strand, within AO356_21770 at 4874.147 kb on + strand, within AO356_21770 at 4874.147 kb on + strand, within AO356_21770 at 4874.147 kb on + strand, within AO356_21770 at 4874.148 kb on - strand, within AO356_21770 at 4874.148 kb on - strand, within AO356_21770 at 4874.168 kb on + strand, within AO356_21770 at 4874.168 kb on + strand, within AO356_21770 at 4874.169 kb on - strand, within AO356_21770 at 4874.267 kb on + strand, within AO356_21770 at 4874.268 kb on - strand, within AO356_21770 at 4874.268 kb on - strand, within AO356_21770 at 4874.316 kb on - strand, within AO356_21770 at 4874.342 kb on + strand, within AO356_21770 at 4874.342 kb on + strand, within AO356_21770 at 4874.541 kb on - strand, within AO356_21770 at 4874.654 kb on + strand at 4874.654 kb on + strand at 4874.655 kb on - strand at 4874.655 kb on - strand at 4874.900 kb on + strand, within AO356_21775 at 4874.900 kb on + strand, within AO356_21775 at 4874.901 kb on - strand, within AO356_21775 at 4874.901 kb on - strand, within AO356_21775 at 4874.901 kb on - strand, within AO356_21775 at 4874.901 kb on - strand, within AO356_21775 at 4874.901 kb on - strand, within AO356_21775 at 4874.981 kb on + strand at 4874.982 kb on - strand at 4875.058 kb on + strand at 4875.058 kb on + strand at 4875.058 kb on + strand at 4875.059 kb on - strand at 4875.059 kb on - strand at 4875.059 kb on - strand at 4875.059 kb on - strand at 4875.059 kb on - strand at 4875.062 kb on + strand at 4875.062 kb on + strand at 4875.062 kb on + strand at 4875.062 kb on + strand at 4875.063 kb on - strand at 4875.063 kb on - strand at 4875.071 kb on - strand at 4875.207 kb on + strand at 4875.208 kb on - strand at 4875.208 kb on - strand at 4875.235 kb on + strand at 4875.236 kb on - strand at 4875.236 kb on - strand at 4875.387 kb on + strand, within AO356_21780 at 4875.387 kb on + strand, within AO356_21780 at 4875.387 kb on + strand, within AO356_21780 at 4875.387 kb on + strand, within AO356_21780 at 4875.388 kb on - strand, within AO356_21780 at 4875.388 kb on - strand, within AO356_21780 at 4875.388 kb on - strand, within AO356_21780 at 4875.409 kb on - strand, within AO356_21780 at 4875.701 kb on + strand, within AO356_21780 at 4875.701 kb on + strand, within AO356_21780 at 4875.701 kb on + strand, within AO356_21780 at 4875.701 kb on + strand, within AO356_21780 at 4875.701 kb on + strand, within AO356_21780 at 4875.702 kb on - strand, within AO356_21780
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,872,032 + AO356_21760 0.89 +0.1 4,872,032 + AO356_21760 0.89 +0.2 4,872,032 + AO356_21760 0.89 -0.5 4,872,033 - AO356_21760 0.89 +0.2 4,872,158 - -2.4 4,872,162 + +0.6 4,872,162 + +0.3 4,872,162 + +1.7 4,872,163 - -1.2 4,872,163 - +0.6 4,872,163 - -0.5 4,872,176 + -0.2 4,872,177 - +0.3 4,872,276 - -1.9 4,872,691 + AO356_21765 0.59 +0.1 4,872,691 + AO356_21765 0.59 +1.4 4,872,931 + +0.6 4,872,931 + -0.5 4,872,931 + -1.3 4,872,932 - +0.1 4,872,932 - -0.3 4,872,935 - -0.5 4,873,000 + -0.2 4,873,000 + +1.2 4,873,000 + +0.6 4,873,000 + +0.0 4,873,000 + -0.3 4,873,000 + -1.2 4,873,000 + +0.3 4,873,000 + -1.3 4,873,001 - +0.7 4,873,023 - +0.8 4,873,023 - +0.0 4,873,208 + AO356_21770 0.12 -0.6 4,873,208 + AO356_21770 0.12 -0.4 4,873,209 - AO356_21770 0.12 -0.1 4,873,262 + AO356_21770 0.15 +0.3 4,873,262 + AO356_21770 0.15 +0.3 4,873,263 - AO356_21770 0.15 +0.5 4,873,263 - AO356_21770 0.15 -0.0 4,873,268 + AO356_21770 0.16 +0.3 4,873,268 + AO356_21770 0.16 +0.1 4,873,268 + AO356_21770 0.16 -0.7 4,873,269 - AO356_21770 0.16 +0.5 4,873,379 + AO356_21770 0.22 -0.3 4,873,379 + AO356_21770 0.22 +1.1 4,873,379 + AO356_21770 0.22 +0.2 4,873,379 + AO356_21770 0.22 +1.2 4,873,380 - AO356_21770 0.22 +0.3 4,873,380 - AO356_21770 0.22 +0.5 4,873,380 - AO356_21770 0.22 -1.4 4,873,380 - AO356_21770 0.22 +0.8 4,873,380 - AO356_21770 0.22 +0.5 4,873,380 - AO356_21770 0.22 -0.4 4,873,635 - AO356_21770 0.37 +1.2 4,873,665 - AO356_21770 0.39 +1.2 4,873,676 + AO356_21770 0.39 -0.1 4,873,739 + AO356_21770 0.43 +1.5 4,873,739 + AO356_21770 0.43 +0.5 4,873,740 - AO356_21770 0.43 +0.6 4,873,760 + AO356_21770 0.44 -0.2 4,873,760 + AO356_21770 0.44 +0.4 4,873,760 + AO356_21770 0.44 -0.3 4,873,760 + AO356_21770 0.44 +1.6 4,873,761 - AO356_21770 0.44 -0.3 4,873,761 - AO356_21770 0.44 -0.0 4,873,761 - AO356_21770 0.44 -0.1 4,873,784 + AO356_21770 0.46 +1.0 4,873,826 + AO356_21770 0.48 -0.4 4,873,827 - AO356_21770 0.48 +0.7 4,874,111 + AO356_21770 0.64 +1.0 4,874,112 - AO356_21770 0.65 +0.4 4,874,147 + AO356_21770 0.67 +0.2 4,874,147 + AO356_21770 0.67 +0.5 4,874,147 + AO356_21770 0.67 +0.4 4,874,147 + AO356_21770 0.67 +0.2 4,874,148 - AO356_21770 0.67 -0.1 4,874,148 - AO356_21770 0.67 +0.0 4,874,168 + AO356_21770 0.68 -0.3 4,874,168 + AO356_21770 0.68 -0.1 4,874,169 - AO356_21770 0.68 +0.8 4,874,267 + AO356_21770 0.73 -0.2 4,874,268 - AO356_21770 0.74 -0.1 4,874,268 - AO356_21770 0.74 -0.5 4,874,316 - AO356_21770 0.76 +1.0 4,874,342 + AO356_21770 0.78 -0.0 4,874,342 + AO356_21770 0.78 +0.0 4,874,541 - AO356_21770 0.89 +0.4 4,874,654 + -0.3 4,874,654 + +1.1 4,874,655 - +0.1 4,874,655 - +0.2 4,874,900 + AO356_21775 0.61 +0.8 4,874,900 + AO356_21775 0.61 +0.3 4,874,901 - AO356_21775 0.61 -0.4 4,874,901 - AO356_21775 0.61 -0.6 4,874,901 - AO356_21775 0.61 +0.2 4,874,901 - AO356_21775 0.61 -0.0 4,874,901 - AO356_21775 0.61 -0.3 4,874,981 + -1.9 4,874,982 - -0.3 4,875,058 + -0.2 4,875,058 + -0.4 4,875,058 + +0.3 4,875,059 - -0.2 4,875,059 - -1.6 4,875,059 - +0.2 4,875,059 - -0.1 4,875,059 - +0.7 4,875,062 + -0.5 4,875,062 + +0.7 4,875,062 + +0.0 4,875,062 + -0.5 4,875,063 - +0.3 4,875,063 - +0.8 4,875,071 - +1.1 4,875,207 + +1.7 4,875,208 - -0.2 4,875,208 - -0.0 4,875,235 + +0.9 4,875,236 - +0.3 4,875,236 - +0.7 4,875,387 + AO356_21780 0.11 -0.9 4,875,387 + AO356_21780 0.11 +0.7 4,875,387 + AO356_21780 0.11 +0.9 4,875,387 + AO356_21780 0.11 -0.1 4,875,388 - AO356_21780 0.11 -0.2 4,875,388 - AO356_21780 0.11 -0.8 4,875,388 - AO356_21780 0.11 +0.6 4,875,409 - AO356_21780 0.13 -0.1 4,875,701 + AO356_21780 0.33 -0.2 4,875,701 + AO356_21780 0.33 -0.0 4,875,701 + AO356_21780 0.33 +0.4 4,875,701 + AO356_21780 0.33 -0.5 4,875,701 + AO356_21780 0.33 -1.0 4,875,702 - AO356_21780 0.33 -0.8
Or see this region's nucleotide sequence