Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14350

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14345 and AO356_14350 are separated by 16 nucleotidesAO356_14350 and AO356_14355 are separated by 130 nucleotides AO356_14345: AO356_14345 - molecular chaperone SurA, at 3,261,041 to 3,262,321 _14345 AO356_14350: AO356_14350 - LPS biosynthesis protein, at 3,262,338 to 3,265,136 _14350 AO356_14355: AO356_14355 - aminoglycoside phosphotransferase, at 3,265,267 to 3,266,292 _14355 Position (kb) 3262 3263 3264 3265 3266Strain fitness (log2 ratio) -1 0 1 2at 3262.399 kb on - strandat 3262.399 kb on - strandat 3262.399 kb on - strandat 3262.399 kb on - strandat 3265.222 kb on - strandat 3265.222 kb on - strandat 3265.222 kb on - strandat 3265.222 kb on - strandat 3265.283 kb on + strandat 3265.283 kb on + strandat 3265.283 kb on + strandat 3265.283 kb on + strandat 3265.283 kb on + strandat 3265.283 kb on + strandat 3265.283 kb on + strandat 3265.284 kb on - strandat 3265.284 kb on - strandat 3265.284 kb on - strandat 3265.284 kb on - strandat 3265.284 kb on - strandat 3265.284 kb on - strandat 3265.284 kb on - strandat 3265.408 kb on + strand, within AO356_14355at 3265.409 kb on - strand, within AO356_14355at 3265.446 kb on - strand, within AO356_14355at 3265.446 kb on - strand, within AO356_14355at 3265.492 kb on - strand, within AO356_14355at 3265.594 kb on + strand, within AO356_14355at 3265.594 kb on + strand, within AO356_14355at 3265.595 kb on - strand, within AO356_14355at 3265.631 kb on + strand, within AO356_14355at 3265.699 kb on + strand, within AO356_14355at 3265.699 kb on + strand, within AO356_14355at 3265.699 kb on + strand, within AO356_14355at 3265.699 kb on + strand, within AO356_14355at 3265.699 kb on + strand, within AO356_14355at 3265.699 kb on + strand, within AO356_14355at 3265.700 kb on - strand, within AO356_14355at 3265.700 kb on - strand, within AO356_14355at 3265.700 kb on - strand, within AO356_14355at 3265.700 kb on - strand, within AO356_14355at 3265.700 kb on - strand, within AO356_14355at 3265.748 kb on - strand, within AO356_14355at 3265.748 kb on - strand, within AO356_14355at 3265.748 kb on - strand, within AO356_14355at 3265.748 kb on - strand, within AO356_14355at 3265.748 kb on - strand, within AO356_14355at 3265.867 kb on + strand, within AO356_14355at 3265.867 kb on + strand, within AO356_14355at 3265.867 kb on + strand, within AO356_14355at 3265.867 kb on + strand, within AO356_14355at 3265.867 kb on + strand, within AO356_14355at 3265.868 kb on - strand, within AO356_14355at 3265.868 kb on - strand, within AO356_14355at 3265.868 kb on - strand, within AO356_14355at 3265.896 kb on - strand, within AO356_14355at 3265.933 kb on + strand, within AO356_14355at 3265.933 kb on + strand, within AO356_14355at 3265.934 kb on - strand, within AO356_14355at 3265.948 kb on + strand, within AO356_14355at 3265.948 kb on + strand, within AO356_14355at 3265.948 kb on + strand, within AO356_14355at 3265.948 kb on + strand, within AO356_14355at 3265.949 kb on - strand, within AO356_14355at 3265.949 kb on - strand, within AO356_14355at 3265.949 kb on - strand, within AO356_14355at 3265.949 kb on - strand, within AO356_14355at 3265.949 kb on - strand, within AO356_14355at 3265.949 kb on - strand, within AO356_14355at 3265.949 kb on - strand, within AO356_14355

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,262,399 - -1.7
3,262,399 - -1.6
3,262,399 - +0.4
3,262,399 - +0.9
3,265,222 - +0.8
3,265,222 - -0.0
3,265,222 - -0.5
3,265,222 - +0.7
3,265,283 + -0.0
3,265,283 + -0.1
3,265,283 + +0.4
3,265,283 + -0.3
3,265,283 + -0.0
3,265,283 + +0.4
3,265,283 + +0.3
3,265,284 - +0.8
3,265,284 - +1.5
3,265,284 - +1.0
3,265,284 - +0.2
3,265,284 - +0.8
3,265,284 - +0.1
3,265,284 - -1.7
3,265,408 + AO356_14355 0.14 +0.3
3,265,409 - AO356_14355 0.14 +1.4
3,265,446 - AO356_14355 0.17 -0.8
3,265,446 - AO356_14355 0.17 +0.8
3,265,492 - AO356_14355 0.22 +0.3
3,265,594 + AO356_14355 0.32 +2.1
3,265,594 + AO356_14355 0.32 +2.7
3,265,595 - AO356_14355 0.32 +1.4
3,265,631 + AO356_14355 0.35 +1.9
3,265,699 + AO356_14355 0.42 +2.5
3,265,699 + AO356_14355 0.42 +0.8
3,265,699 + AO356_14355 0.42 +1.7
3,265,699 + AO356_14355 0.42 +1.5
3,265,699 + AO356_14355 0.42 +0.6
3,265,699 + AO356_14355 0.42 +0.9
3,265,700 - AO356_14355 0.42 +1.3
3,265,700 - AO356_14355 0.42 +0.6
3,265,700 - AO356_14355 0.42 +1.6
3,265,700 - AO356_14355 0.42 -0.2
3,265,700 - AO356_14355 0.42 +0.8
3,265,748 - AO356_14355 0.47 +1.3
3,265,748 - AO356_14355 0.47 +1.3
3,265,748 - AO356_14355 0.47 -1.2
3,265,748 - AO356_14355 0.47 +1.4
3,265,748 - AO356_14355 0.47 +0.5
3,265,867 + AO356_14355 0.58 +1.8
3,265,867 + AO356_14355 0.58 +1.9
3,265,867 + AO356_14355 0.58 +1.6
3,265,867 + AO356_14355 0.58 +1.1
3,265,867 + AO356_14355 0.58 +0.7
3,265,868 - AO356_14355 0.59 +2.0
3,265,868 - AO356_14355 0.59 +1.1
3,265,868 - AO356_14355 0.59 +0.6
3,265,896 - AO356_14355 0.61 +1.5
3,265,933 + AO356_14355 0.65 +1.2
3,265,933 + AO356_14355 0.65 +0.8
3,265,934 - AO356_14355 0.65 +2.1
3,265,948 + AO356_14355 0.66 +0.7
3,265,948 + AO356_14355 0.66 +1.0
3,265,948 + AO356_14355 0.66 +1.0
3,265,948 + AO356_14355 0.66 +1.4
3,265,949 - AO356_14355 0.66 +1.3
3,265,949 - AO356_14355 0.66 +0.6
3,265,949 - AO356_14355 0.66 +0.9
3,265,949 - AO356_14355 0.66 +0.4
3,265,949 - AO356_14355 0.66 +1.3
3,265,949 - AO356_14355 0.66 +0.5
3,265,949 - AO356_14355 0.66 +1.4

Or see this region's nucleotide sequence