Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08135

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08125 and AO356_08130 overlap by 4 nucleotidesAO356_08130 and AO356_08135 are separated by 164 nucleotidesAO356_08135 and AO356_08140 are separated by 276 nucleotides AO356_08125: AO356_08125 - SAM-dependent methyltransferase, at 1,818,474 to 1,819,223 _08125 AO356_08130: AO356_08130 - pyrophosphatase, at 1,819,220 to 1,819,525 _08130 AO356_08135: AO356_08135 - MFS transporter, at 1,819,690 to 1,819,983 _08135 AO356_08140: AO356_08140 - MATE family efflux transporter, at 1,820,260 to 1,821,609 _08140 Position (kb) 1819 1820Strain fitness (log2 ratio) -2 -1 0 1at 1818.790 kb on + strand, within AO356_08125at 1818.791 kb on - strand, within AO356_08125at 1819.171 kb on + strandat 1819.311 kb on + strand, within AO356_08130at 1819.311 kb on + strand, within AO356_08130at 1819.311 kb on + strand, within AO356_08130at 1819.312 kb on - strand, within AO356_08130at 1819.312 kb on - strand, within AO356_08130at 1819.546 kb on + strandat 1819.546 kb on + strandat 1819.546 kb on + strandat 1819.547 kb on - strandat 1819.637 kb on + strandat 1819.637 kb on + strandat 1819.637 kb on + strandat 1819.638 kb on - strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.689 kb on + strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.690 kb on - strandat 1819.697 kb on + strandat 1819.697 kb on + strandat 1819.698 kb on - strandat 1819.698 kb on - strandat 1819.698 kb on - strandat 1819.888 kb on + strand, within AO356_08135at 1819.888 kb on + strand, within AO356_08135at 1819.889 kb on - strand, within AO356_08135at 1819.889 kb on - strand, within AO356_08135at 1820.178 kb on + strandat 1820.178 kb on + strandat 1820.179 kb on - strandat 1820.179 kb on - strandat 1820.179 kb on - strandat 1820.232 kb on + strandat 1820.232 kb on + strandat 1820.233 kb on - strandat 1820.440 kb on + strand, within AO356_08140at 1820.440 kb on + strand, within AO356_08140at 1820.440 kb on + strand, within AO356_08140at 1820.441 kb on - strand, within AO356_08140at 1820.441 kb on - strand, within AO356_08140at 1820.442 kb on + strand, within AO356_08140at 1820.442 kb on + strand, within AO356_08140at 1820.443 kb on - strand, within AO356_08140at 1820.601 kb on - strand, within AO356_08140at 1820.714 kb on - strand, within AO356_08140at 1820.714 kb on - strand, within AO356_08140

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,818,790 + AO356_08125 0.42 +0.5
1,818,791 - AO356_08125 0.42 +0.8
1,819,171 + +0.8
1,819,311 + AO356_08130 0.30 +0.0
1,819,311 + AO356_08130 0.30 +0.3
1,819,311 + AO356_08130 0.30 +0.7
1,819,312 - AO356_08130 0.30 -0.3
1,819,312 - AO356_08130 0.30 +0.1
1,819,546 + -1.4
1,819,546 + -0.0
1,819,546 + -0.2
1,819,547 - -0.0
1,819,637 + -2.1
1,819,637 + +0.3
1,819,637 + +0.2
1,819,638 - +0.6
1,819,689 + +1.2
1,819,689 + -0.2
1,819,689 + -0.4
1,819,689 + -1.7
1,819,689 + -0.6
1,819,689 + -0.2
1,819,689 + +0.9
1,819,689 + +0.1
1,819,689 + +0.3
1,819,689 + -0.1
1,819,689 + +0.1
1,819,689 + -0.5
1,819,689 + -0.3
1,819,689 + -0.9
1,819,689 + +0.2
1,819,689 + +0.7
1,819,689 + +0.6
1,819,689 + -0.8
1,819,690 - -0.9
1,819,690 - +0.1
1,819,690 - +1.1
1,819,690 - -0.5
1,819,690 - -0.4
1,819,690 - +0.3
1,819,690 - +0.2
1,819,690 - -0.3
1,819,690 - -0.3
1,819,690 - +0.5
1,819,690 - -0.6
1,819,690 - +0.5
1,819,690 - -0.2
1,819,690 - +0.5
1,819,690 - +0.0
1,819,690 - +0.3
1,819,690 - -0.7
1,819,690 - -0.7
1,819,690 - -0.7
1,819,690 - +0.3
1,819,690 - -0.4
1,819,690 - -0.2
1,819,690 - +0.5
1,819,697 + +0.2
1,819,697 + +0.4
1,819,698 - +0.4
1,819,698 - +0.6
1,819,698 - +0.3
1,819,888 + AO356_08135 0.67 +0.9
1,819,888 + AO356_08135 0.67 -0.1
1,819,889 - AO356_08135 0.68 +0.5
1,819,889 - AO356_08135 0.68 +1.2
1,820,178 + +0.2
1,820,178 + +0.1
1,820,179 - -0.1
1,820,179 - -1.5
1,820,179 - +0.6
1,820,232 + -0.1
1,820,232 + +0.5
1,820,233 - -0.0
1,820,440 + AO356_08140 0.13 -1.1
1,820,440 + AO356_08140 0.13 +0.1
1,820,440 + AO356_08140 0.13 +0.5
1,820,441 - AO356_08140 0.13 -1.1
1,820,441 - AO356_08140 0.13 -0.1
1,820,442 + AO356_08140 0.13 -0.1
1,820,442 + AO356_08140 0.13 +0.5
1,820,443 - AO356_08140 0.14 -0.6
1,820,601 - AO356_08140 0.25 -0.1
1,820,714 - AO356_08140 0.34 +0.4
1,820,714 - AO356_08140 0.34 -0.9

Or see this region's nucleotide sequence