Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08125 and AO356_08130 overlap by 4 nucleotides AO356_08130 and AO356_08135 are separated by 164 nucleotides AO356_08135 and AO356_08140 are separated by 276 nucleotides
AO356_08125: AO356_08125 - SAM-dependent methyltransferase, at 1,818,474 to 1,819,223
_08125
AO356_08130: AO356_08130 - pyrophosphatase, at 1,819,220 to 1,819,525
_08130
AO356_08135: AO356_08135 - MFS transporter, at 1,819,690 to 1,819,983
_08135
AO356_08140: AO356_08140 - MATE family efflux transporter, at 1,820,260 to 1,821,609
_08140
Position (kb)
1819
1820 Strain fitness (log2 ratio)
-2
-1
0
1 at 1818.790 kb on + strand, within AO356_08125 at 1818.791 kb on - strand, within AO356_08125 at 1819.171 kb on + strand at 1819.311 kb on + strand, within AO356_08130 at 1819.311 kb on + strand, within AO356_08130 at 1819.311 kb on + strand, within AO356_08130 at 1819.312 kb on - strand, within AO356_08130 at 1819.312 kb on - strand, within AO356_08130 at 1819.546 kb on + strand at 1819.546 kb on + strand at 1819.546 kb on + strand at 1819.547 kb on - strand at 1819.637 kb on + strand at 1819.637 kb on + strand at 1819.637 kb on + strand at 1819.638 kb on - strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.689 kb on + strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.690 kb on - strand at 1819.697 kb on + strand at 1819.697 kb on + strand at 1819.698 kb on - strand at 1819.698 kb on - strand at 1819.698 kb on - strand at 1819.888 kb on + strand, within AO356_08135 at 1819.888 kb on + strand, within AO356_08135 at 1819.889 kb on - strand, within AO356_08135 at 1819.889 kb on - strand, within AO356_08135 at 1820.178 kb on + strand at 1820.178 kb on + strand at 1820.179 kb on - strand at 1820.179 kb on - strand at 1820.179 kb on - strand at 1820.232 kb on + strand at 1820.232 kb on + strand at 1820.233 kb on - strand at 1820.440 kb on + strand, within AO356_08140 at 1820.440 kb on + strand, within AO356_08140 at 1820.440 kb on + strand, within AO356_08140 at 1820.441 kb on - strand, within AO356_08140 at 1820.441 kb on - strand, within AO356_08140 at 1820.442 kb on + strand, within AO356_08140 at 1820.442 kb on + strand, within AO356_08140 at 1820.443 kb on - strand, within AO356_08140 at 1820.601 kb on - strand, within AO356_08140 at 1820.714 kb on - strand, within AO356_08140 at 1820.714 kb on - strand, within AO356_08140
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,818,790 + AO356_08125 0.42 +0.5 1,818,791 - AO356_08125 0.42 +0.8 1,819,171 + +0.8 1,819,311 + AO356_08130 0.30 +0.0 1,819,311 + AO356_08130 0.30 +0.3 1,819,311 + AO356_08130 0.30 +0.7 1,819,312 - AO356_08130 0.30 -0.3 1,819,312 - AO356_08130 0.30 +0.1 1,819,546 + -1.4 1,819,546 + -0.0 1,819,546 + -0.2 1,819,547 - -0.0 1,819,637 + -2.1 1,819,637 + +0.3 1,819,637 + +0.2 1,819,638 - +0.6 1,819,689 + +1.2 1,819,689 + -0.2 1,819,689 + -0.4 1,819,689 + -1.7 1,819,689 + -0.6 1,819,689 + -0.2 1,819,689 + +0.9 1,819,689 + +0.1 1,819,689 + +0.3 1,819,689 + -0.1 1,819,689 + +0.1 1,819,689 + -0.5 1,819,689 + -0.3 1,819,689 + -0.9 1,819,689 + +0.2 1,819,689 + +0.7 1,819,689 + +0.6 1,819,689 + -0.8 1,819,690 - -0.9 1,819,690 - +0.1 1,819,690 - +1.1 1,819,690 - -0.5 1,819,690 - -0.4 1,819,690 - +0.3 1,819,690 - +0.2 1,819,690 - -0.3 1,819,690 - -0.3 1,819,690 - +0.5 1,819,690 - -0.6 1,819,690 - +0.5 1,819,690 - -0.2 1,819,690 - +0.5 1,819,690 - +0.0 1,819,690 - +0.3 1,819,690 - -0.7 1,819,690 - -0.7 1,819,690 - -0.7 1,819,690 - +0.3 1,819,690 - -0.4 1,819,690 - -0.2 1,819,690 - +0.5 1,819,697 + +0.2 1,819,697 + +0.4 1,819,698 - +0.4 1,819,698 - +0.6 1,819,698 - +0.3 1,819,888 + AO356_08135 0.67 +0.9 1,819,888 + AO356_08135 0.67 -0.1 1,819,889 - AO356_08135 0.68 +0.5 1,819,889 - AO356_08135 0.68 +1.2 1,820,178 + +0.2 1,820,178 + +0.1 1,820,179 - -0.1 1,820,179 - -1.5 1,820,179 - +0.6 1,820,232 + -0.1 1,820,232 + +0.5 1,820,233 - -0.0 1,820,440 + AO356_08140 0.13 -1.1 1,820,440 + AO356_08140 0.13 +0.1 1,820,440 + AO356_08140 0.13 +0.5 1,820,441 - AO356_08140 0.13 -1.1 1,820,441 - AO356_08140 0.13 -0.1 1,820,442 + AO356_08140 0.13 -0.1 1,820,442 + AO356_08140 0.13 +0.5 1,820,443 - AO356_08140 0.14 -0.6 1,820,601 - AO356_08140 0.25 -0.1 1,820,714 - AO356_08140 0.34 +0.4 1,820,714 - AO356_08140 0.34 -0.9
Or see this region's nucleotide sequence