Strain Fitness in Sinorhizobium meliloti 1021 around SMc04409

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04881 and SMc04408 overlap by 4 nucleotidesSMc04408 and SMc04409 are separated by 128 nucleotidesSMc04409 and SMc04410 are separated by 113 nucleotides SMc04881: SMc04881 - virulence associated protein, at 3,616,239 to 3,616,643 SMc04881 SMc04408: SMc04408 - virulence-associated protein, at 3,616,640 to 3,616,900 SMc04408 SMc04409: SMc04409 - hypothetical protein, at 3,617,029 to 3,617,199 SMc04409 SMc04410: SMc04410 - aspartate-semialdehyde dehydrogenase, at 3,617,313 to 3,618,347 SMc04410 Position (kb) 3617 3618Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3616.199 kb on + strandat 3616.217 kb on + strandat 3616.217 kb on + strandat 3616.223 kb on + strandat 3616.223 kb on + strandat 3616.223 kb on + strandat 3616.223 kb on + strandat 3616.240 kb on + strandat 3616.241 kb on - strandat 3616.277 kb on + strandat 3616.277 kb on + strandat 3616.352 kb on - strand, within SMc04881at 3616.352 kb on - strand, within SMc04881at 3616.519 kb on + strand, within SMc04881at 3616.566 kb on + strand, within SMc04881at 3616.566 kb on + strand, within SMc04881at 3616.566 kb on + strand, within SMc04881at 3616.567 kb on - strand, within SMc04881at 3616.631 kb on + strandat 3616.923 kb on - strandat 3617.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,616,199 + +0.7
3,616,217 + -0.5
3,616,217 + -0.4
3,616,223 + +0.6
3,616,223 + -0.1
3,616,223 + -1.9
3,616,223 + +0.4
3,616,240 + -0.5
3,616,241 - +0.2
3,616,277 + -0.1
3,616,277 + +0.6
3,616,352 - SMc04881 0.28 -1.0
3,616,352 - SMc04881 0.28 +1.3
3,616,519 + SMc04881 0.69 +0.0
3,616,566 + SMc04881 0.81 +0.9
3,616,566 + SMc04881 0.81 +0.0
3,616,566 + SMc04881 0.81 -1.4
3,616,567 - SMc04881 0.81 +0.1
3,616,631 + +0.2
3,616,923 - +0.1
3,617,307 + -5.3

Or see this region's nucleotide sequence