Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03818 and SMc03819 are separated by 13 nucleotides SMc03819 and SMc03820 are separated by 32 nucleotides SMc03820 and SMc03821 are separated by 246 nucleotides SMc03821 and SMc03822 are separated by 37 nucleotides
SMc03818: SMc03818 - exodeoxyribonuclease III protein, at 3,485,446 to 3,486,252
SMc03818
SMc03819: SMc03819 - hypothetical protein, at 3,486,266 to 3,486,721
SMc03819
SMc03820: SMc03820 - transcriptional regulator, at 3,486,754 to 3,487,437
SMc03820
SMc03821: SMc03821 - hypothetical protein, at 3,487,684 to 3,488,232
SMc03821
SMc03822: SMc03822 - hypothetical protein, at 3,488,270 to 3,488,821
SMc03822
Position (kb)
3486
3487
3488 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3485.770 kb on - strand, within SMc03818 at 3485.770 kb on - strand, within SMc03818 at 3485.770 kb on - strand, within SMc03818 at 3486.071 kb on - strand, within SMc03818 at 3486.071 kb on - strand, within SMc03818 at 3486.086 kb on - strand, within SMc03818 at 3486.743 kb on + strand at 3487.531 kb on - strand at 3487.539 kb on + strand at 3487.623 kb on + strand at 3487.624 kb on - strand at 3487.624 kb on - strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.626 kb on - strand at 3487.640 kb on - strand at 3487.981 kb on + strand, within SMc03821 at 3487.982 kb on - strand, within SMc03821 at 3487.982 kb on - strand, within SMc03821 at 3488.047 kb on + strand, within SMc03821 at 3488.047 kb on + strand, within SMc03821 at 3488.048 kb on - strand, within SMc03821 at 3488.340 kb on - strand at 3488.340 kb on - strand, within SMc03822 at 3488.340 kb on - strand, within SMc03822
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,485,770 - SMc03818 0.40 +0.2 3,485,770 - SMc03818 0.40 -0.2 3,485,770 - SMc03818 0.40 +3.5 3,486,071 - SMc03818 0.77 +0.0 3,486,071 - SMc03818 0.77 -0.6 3,486,086 - SMc03818 0.79 -0.3 3,486,743 + -0.7 3,487,531 - +1.0 3,487,539 + +0.9 3,487,623 + -0.4 3,487,624 - +0.9 3,487,624 - +0.1 3,487,625 + -0.3 3,487,625 + -0.1 3,487,625 + +0.4 3,487,625 + +0.6 3,487,625 + -0.0 3,487,625 + -0.4 3,487,626 - -0.7 3,487,640 - -1.2 3,487,981 + SMc03821 0.54 -0.5 3,487,982 - SMc03821 0.54 -0.2 3,487,982 - SMc03821 0.54 -0.5 3,488,047 + SMc03821 0.66 -0.3 3,488,047 + SMc03821 0.66 -0.1 3,488,048 - SMc03821 0.66 +0.2 3,488,340 - +0.1 3,488,340 - SMc03822 0.13 +0.4 3,488,340 - SMc03822 0.13 -0.3
Or see this region's nucleotide sequence