Strain Fitness in Sinorhizobium meliloti 1021 around SMc03820

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03818 and SMc03819 are separated by 13 nucleotidesSMc03819 and SMc03820 are separated by 32 nucleotidesSMc03820 and SMc03821 are separated by 246 nucleotidesSMc03821 and SMc03822 are separated by 37 nucleotides SMc03818: SMc03818 - exodeoxyribonuclease III protein, at 3,485,446 to 3,486,252 SMc03818 SMc03819: SMc03819 - hypothetical protein, at 3,486,266 to 3,486,721 SMc03819 SMc03820: SMc03820 - transcriptional regulator, at 3,486,754 to 3,487,437 SMc03820 SMc03821: SMc03821 - hypothetical protein, at 3,487,684 to 3,488,232 SMc03821 SMc03822: SMc03822 - hypothetical protein, at 3,488,270 to 3,488,821 SMc03822 Position (kb) 3486 3487 3488Strain fitness (log2 ratio) -1 0 1 2 3at 3485.770 kb on - strand, within SMc03818at 3485.770 kb on - strand, within SMc03818at 3485.770 kb on - strand, within SMc03818at 3486.071 kb on - strand, within SMc03818at 3486.071 kb on - strand, within SMc03818at 3486.086 kb on - strand, within SMc03818at 3486.743 kb on + strandat 3487.531 kb on - strandat 3487.539 kb on + strandat 3487.623 kb on + strandat 3487.624 kb on - strandat 3487.624 kb on - strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.626 kb on - strandat 3487.640 kb on - strandat 3487.981 kb on + strand, within SMc03821at 3487.982 kb on - strand, within SMc03821at 3487.982 kb on - strand, within SMc03821at 3488.047 kb on + strand, within SMc03821at 3488.047 kb on + strand, within SMc03821at 3488.048 kb on - strand, within SMc03821at 3488.340 kb on - strandat 3488.340 kb on - strand, within SMc03822at 3488.340 kb on - strand, within SMc03822

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,485,770 - SMc03818 0.40 +0.2
3,485,770 - SMc03818 0.40 -0.2
3,485,770 - SMc03818 0.40 +3.5
3,486,071 - SMc03818 0.77 +0.0
3,486,071 - SMc03818 0.77 -0.6
3,486,086 - SMc03818 0.79 -0.3
3,486,743 + -0.7
3,487,531 - +1.0
3,487,539 + +0.9
3,487,623 + -0.4
3,487,624 - +0.9
3,487,624 - +0.1
3,487,625 + -0.3
3,487,625 + -0.1
3,487,625 + +0.4
3,487,625 + +0.6
3,487,625 + -0.0
3,487,625 + -0.4
3,487,626 - -0.7
3,487,640 - -1.2
3,487,981 + SMc03821 0.54 -0.5
3,487,982 - SMc03821 0.54 -0.2
3,487,982 - SMc03821 0.54 -0.5
3,488,047 + SMc03821 0.66 -0.3
3,488,047 + SMc03821 0.66 -0.1
3,488,048 - SMc03821 0.66 +0.2
3,488,340 - +0.1
3,488,340 - SMc03822 0.13 +0.4
3,488,340 - SMc03822 0.13 -0.3

Or see this region's nucleotide sequence