Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03259 and SMc03260 are separated by 601 nucleotides SMc03260 and SMc03262 are separated by 524 nucleotides
SMc03259: SMc03259 - hypothetical protein, at 3,374,237 to 3,375,145
SMc03259
SMc03260: SMc03260 - transposase, at 3,375,747 to 3,377,081
SMc03260
SMc03262: SMc03262 - hypothetical protein, at 3,377,606 to 3,377,863
SMc03262
Position (kb)
3375
3376
3377
3378 Strain fitness (log2 ratio)
-2
-1
0
1 at 3374.763 kb on - strand, within SMc03259 at 3374.785 kb on + strand, within SMc03259 at 3374.786 kb on - strand, within SMc03259 at 3374.812 kb on + strand, within SMc03259 at 3374.813 kb on - strand, within SMc03259 at 3374.813 kb on - strand, within SMc03259 at 3374.813 kb on - strand, within SMc03259 at 3374.914 kb on + strand, within SMc03259 at 3374.918 kb on + strand, within SMc03259 at 3374.918 kb on + strand, within SMc03259 at 3374.980 kb on + strand, within SMc03259 at 3374.980 kb on + strand, within SMc03259 at 3374.980 kb on + strand, within SMc03259 at 3374.994 kb on - strand, within SMc03259 at 3374.998 kb on + strand, within SMc03259 at 3374.998 kb on + strand, within SMc03259 at 3374.999 kb on - strand, within SMc03259 at 3375.084 kb on + strand at 3375.085 kb on - strand at 3375.085 kb on - strand at 3375.147 kb on - strand at 3375.147 kb on - strand at 3375.147 kb on - strand at 3375.215 kb on + strand at 3375.216 kb on - strand at 3375.216 kb on - strand at 3375.216 kb on - strand at 3375.216 kb on - strand at 3375.226 kb on + strand at 3375.227 kb on - strand at 3375.391 kb on + strand at 3375.391 kb on + strand at 3375.391 kb on + strand at 3375.392 kb on - strand at 3375.392 kb on - strand at 3375.473 kb on + strand at 3375.553 kb on - strand at 3375.593 kb on - strand at 3377.226 kb on + strand at 3377.256 kb on + strand at 3377.256 kb on + strand at 3377.257 kb on - strand at 3377.257 kb on - strand at 3377.257 kb on - strand at 3377.551 kb on + strand at 3377.552 kb on - strand at 3377.552 kb on - strand at 3377.552 kb on - strand at 3377.552 kb on - strand at 3377.552 kb on - strand at 3377.608 kb on - strand at 3377.741 kb on + strand, within SMc03262 at 3377.742 kb on - strand, within SMc03262 at 3377.764 kb on + strand, within SMc03262 at 3377.764 kb on + strand, within SMc03262 at 3377.764 kb on + strand, within SMc03262 at 3377.764 kb on + strand, within SMc03262 at 3377.764 kb on + strand, within SMc03262 at 3377.764 kb on + strand, within SMc03262 at 3377.764 kb on + strand, within SMc03262 at 3377.764 kb on + strand, within SMc03262 at 3377.765 kb on - strand, within SMc03262 at 3377.765 kb on - strand, within SMc03262 at 3377.765 kb on - strand, within SMc03262 at 3377.765 kb on - strand, within SMc03262 at 3377.765 kb on - strand, within SMc03262 at 3377.767 kb on + strand, within SMc03262 at 3377.768 kb on - strand, within SMc03262 at 3377.839 kb on + strand at 3377.880 kb on - strand at 3377.889 kb on + strand at 3377.955 kb on - strand at 3378.035 kb on + strand at 3378.036 kb on - strand at 3378.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,374,763 - SMc03259 0.58 -0.0 3,374,785 + SMc03259 0.60 +0.5 3,374,786 - SMc03259 0.60 +0.2 3,374,812 + SMc03259 0.63 +0.6 3,374,813 - SMc03259 0.63 +0.3 3,374,813 - SMc03259 0.63 +0.3 3,374,813 - SMc03259 0.63 -0.0 3,374,914 + SMc03259 0.74 +0.5 3,374,918 + SMc03259 0.75 +0.7 3,374,918 + SMc03259 0.75 -0.2 3,374,980 + SMc03259 0.82 -0.5 3,374,980 + SMc03259 0.82 -0.8 3,374,980 + SMc03259 0.82 +0.4 3,374,994 - SMc03259 0.83 +0.3 3,374,998 + SMc03259 0.84 -0.1 3,374,998 + SMc03259 0.84 -0.9 3,374,999 - SMc03259 0.84 -0.5 3,375,084 + -1.1 3,375,085 - -0.6 3,375,085 - -1.5 3,375,147 - +0.3 3,375,147 - -0.1 3,375,147 - -0.2 3,375,215 + +1.0 3,375,216 - +0.2 3,375,216 - +0.5 3,375,216 - -2.1 3,375,216 - +0.3 3,375,226 + +0.7 3,375,227 - +0.0 3,375,391 + -0.1 3,375,391 + -0.3 3,375,391 + -0.2 3,375,392 - +0.5 3,375,392 - -0.1 3,375,473 + -0.2 3,375,553 - +0.9 3,375,593 - +0.4 3,377,226 + +0.3 3,377,256 + -0.0 3,377,256 + +0.0 3,377,257 - +1.5 3,377,257 - +0.2 3,377,257 - +0.1 3,377,551 + +0.1 3,377,552 - +1.2 3,377,552 - -0.6 3,377,552 - -0.6 3,377,552 - -0.4 3,377,552 - -0.6 3,377,608 - -0.2 3,377,741 + SMc03262 0.52 -0.3 3,377,742 - SMc03262 0.53 -0.1 3,377,764 + SMc03262 0.61 +0.1 3,377,764 + SMc03262 0.61 +1.1 3,377,764 + SMc03262 0.61 +0.0 3,377,764 + SMc03262 0.61 -0.9 3,377,764 + SMc03262 0.61 -0.1 3,377,764 + SMc03262 0.61 -0.1 3,377,764 + SMc03262 0.61 -0.2 3,377,764 + SMc03262 0.61 -0.6 3,377,765 - SMc03262 0.62 +0.1 3,377,765 - SMc03262 0.62 -0.8 3,377,765 - SMc03262 0.62 -0.4 3,377,765 - SMc03262 0.62 -0.3 3,377,765 - SMc03262 0.62 -0.3 3,377,767 + SMc03262 0.62 +0.1 3,377,768 - SMc03262 0.63 +1.1 3,377,839 + +0.7 3,377,880 - -0.1 3,377,889 + +0.1 3,377,955 - -0.0 3,378,035 + +0.4 3,378,036 - -0.7 3,378,038 - +0.1
Or see this region's nucleotide sequence