Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02361 and SMc02362 overlap by 4 nucleotides SMc02362 and SMc02363 overlap by 4 nucleotides SMc02363 and SMc02364 are separated by 60 nucleotides SMc02364 and SMc02365 are separated by 299 nucleotides
SMc02361: SMc02361 - cytochrome C-type biogenesis transmembrane protein, at 1,107,820 to 1,108,965
SMc02361
SMc02362: SMc02362 - cytochrome c-type biogenesis protein CcmE, at 1,108,962 to 1,109,414
SMc02362
SMc02363: SMc02363 - cytochrome C-type biogenesis transmembrane protein, at 1,109,411 to 1,111,441
SMc02363
SMc02364: SMc02364 - cytochrome C-type biogenesis transmembrane protein, at 1,111,502 to 1,111,957
SMc02364
SMc02365: SMc02365 - protease precursor protein, at 1,112,257 to 1,113,771
SMc02365
Position (kb)
1109
1110
1111
1112 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1108.438 kb on - strand, within SMc02361 at 1108.438 kb on - strand, within SMc02361 at 1108.692 kb on + strand, within SMc02361 at 1108.693 kb on - strand, within SMc02361 at 1108.822 kb on + strand, within SMc02361 at 1108.822 kb on + strand, within SMc02361 at 1108.822 kb on + strand, within SMc02361 at 1109.070 kb on + strand, within SMc02362 at 1109.220 kb on + strand, within SMc02362 at 1109.340 kb on + strand, within SMc02362 at 1109.340 kb on + strand, within SMc02362 at 1111.058 kb on + strand, within SMc02363 at 1111.199 kb on + strand, within SMc02363 at 1111.199 kb on + strand, within SMc02363 at 1111.200 kb on - strand, within SMc02363 at 1111.433 kb on - strand at 1111.440 kb on - strand at 1112.026 kb on - strand at 1112.057 kb on + strand at 1112.058 kb on - strand at 1112.058 kb on - strand at 1112.072 kb on + strand at 1112.073 kb on - strand at 1112.223 kb on + strand at 1112.223 kb on + strand at 1112.223 kb on + strand at 1112.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,108,438 - SMc02361 0.54 -1.3 1,108,438 - SMc02361 0.54 -2.0 1,108,692 + SMc02361 0.76 +0.1 1,108,693 - SMc02361 0.76 -1.5 1,108,822 + SMc02361 0.87 +1.1 1,108,822 + SMc02361 0.87 -0.6 1,108,822 + SMc02361 0.87 -0.8 1,109,070 + SMc02362 0.24 -3.3 1,109,220 + SMc02362 0.57 -3.6 1,109,340 + SMc02362 0.83 -2.6 1,109,340 + SMc02362 0.83 -2.0 1,111,058 + SMc02363 0.81 -2.6 1,111,199 + SMc02363 0.88 -1.3 1,111,199 + SMc02363 0.88 -2.9 1,111,200 - SMc02363 0.88 -1.8 1,111,433 - +1.0 1,111,440 - -0.8 1,112,026 - +1.4 1,112,057 + +0.1 1,112,058 - +0.8 1,112,058 - +0.8 1,112,072 + -1.2 1,112,073 - +0.8 1,112,223 + +1.1 1,112,223 + +0.7 1,112,223 + +1.4 1,112,223 + +1.1
Or see this region's nucleotide sequence