Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02159 and SMc02158 overlap by 4 nucleotides SMc02158 and SMc02157 are separated by 7 nucleotides SMc02157 and SMc02156 are separated by 150 nucleotides
SMc02159: SMc02159 - hypothetical protein, at 537,425 to 538,090
SMc02159
SMc02158: SMc02158 - acyltransferase, at 538,087 to 538,698
SMc02158
SMc02157: SMc02157 - hypothetical protein, at 538,706 to 539,647
SMc02157
SMc02156: SMc02156 - hypothetical protein, at 539,798 to 540,595
SMc02156
Position (kb) 538
539
540 Strain fitness (log2 ratio) -1
0
1
2 at 537.734 kb on + strand, within SMc02159 at 537.735 kb on - strand, within SMc02159 at 537.788 kb on + strand, within SMc02159 at 537.788 kb on + strand, within SMc02159 at 537.848 kb on + strand, within SMc02159 at 537.848 kb on + strand, within SMc02159 at 537.849 kb on - strand, within SMc02159 at 537.992 kb on + strand, within SMc02159 at 538.180 kb on + strand, within SMc02158 at 538.181 kb on - strand, within SMc02158 at 538.279 kb on + strand, within SMc02158 at 538.279 kb on + strand, within SMc02158 at 538.308 kb on + strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.574 kb on + strand, within SMc02158 at 538.729 kb on + strand at 538.846 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.941 kb on - strand, within SMc02157 at 539.012 kb on + strand, within SMc02157 at 539.013 kb on - strand, within SMc02157 at 539.033 kb on + strand, within SMc02157 at 539.057 kb on + strand, within SMc02157 at 539.088 kb on - strand, within SMc02157 at 539.088 kb on - strand, within SMc02157 at 539.176 kb on + strand, within SMc02157 at 539.176 kb on + strand, within SMc02157 at 539.176 kb on + strand, within SMc02157 at 539.189 kb on + strand, within SMc02157 at 539.306 kb on + strand, within SMc02157 at 539.306 kb on + strand, within SMc02157 at 539.307 kb on - strand, within SMc02157 at 539.777 kb on - strand at 539.777 kb on - strand at 539.918 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.099 kb on - strand, within SMc02156 at 540.099 kb on - strand, within SMc02156 at 540.132 kb on + strand, within SMc02156 at 540.132 kb on + strand, within SMc02156 at 540.134 kb on + strand, within SMc02156 at 540.134 kb on + strand, within SMc02156 at 540.476 kb on - strand, within SMc02156 at 540.539 kb on + strand at 540.599 kb on + strand at 540.600 kb on - strand at 540.600 kb on - strand at 540.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 537,734 + SMc02159 0.46 +0.2 537,735 - SMc02159 0.47 -1.4 537,788 + SMc02159 0.55 -0.2 537,788 + SMc02159 0.55 -0.3 537,848 + SMc02159 0.64 +0.0 537,848 + SMc02159 0.64 +0.9 537,849 - SMc02159 0.64 -0.6 537,992 + SMc02159 0.85 -0.1 538,180 + SMc02158 0.15 -0.5 538,181 - SMc02158 0.15 +0.3 538,279 + SMc02158 0.31 +0.8 538,279 + SMc02158 0.31 +0.1 538,308 + SMc02158 0.36 +0.3 538,309 - SMc02158 0.36 +0.1 538,309 - SMc02158 0.36 -1.5 538,309 - SMc02158 0.36 +0.4 538,574 + SMc02158 0.80 -0.0 538,729 + -0.3 538,846 + SMc02157 0.15 +0.1 538,940 + SMc02157 0.25 +0.1 538,940 + SMc02157 0.25 -0.3 538,940 + SMc02157 0.25 +2.5 538,941 - SMc02157 0.25 -0.1 539,012 + SMc02157 0.32 +0.2 539,013 - SMc02157 0.33 +0.2 539,033 + SMc02157 0.35 +0.6 539,057 + SMc02157 0.37 -0.1 539,088 - SMc02157 0.41 -0.0 539,088 - SMc02157 0.41 +0.4 539,176 + SMc02157 0.50 +0.2 539,176 + SMc02157 0.50 +0.3 539,176 + SMc02157 0.50 +1.1 539,189 + SMc02157 0.51 -0.4 539,306 + SMc02157 0.64 +1.5 539,306 + SMc02157 0.64 -0.1 539,307 - SMc02157 0.64 +1.2 539,777 - -0.3 539,777 - -0.9 539,918 + SMc02156 0.15 +0.3 540,098 + SMc02156 0.38 +0.3 540,098 + SMc02156 0.38 +0.2 540,098 + SMc02156 0.38 +0.3 540,099 - SMc02156 0.38 +0.1 540,099 - SMc02156 0.38 -1.1 540,132 + SMc02156 0.42 +0.3 540,132 + SMc02156 0.42 +0.2 540,134 + SMc02156 0.42 +0.2 540,134 + SMc02156 0.42 -0.7 540,476 - SMc02156 0.85 +0.7 540,539 + +0.3 540,599 + +0.1 540,600 - -0.1 540,600 - -0.2 540,613 + +0.2
Or see this region's nucleotide sequence