Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01766 and SMc01767 are separated by 51 nucleotides SMc01767 and SMc01768 are separated by 130 nucleotides SMc01768 and SMc01769 are separated by 424 nucleotides
SMc01766: SMc01766 - delta-aminolevulinic acid dehydratase, at 1,312,688 to 1,313,830
SMc01766
SMc01767: SMc01767 - hypothetical protein, at 1,313,882 to 1,314,319
SMc01767
SMc01768: SMc01768 - transcriptional regulator, at 1,314,450 to 1,314,962
SMc01768
SMc01769: SMc01769 - hypothetical protein, at 1,315,387 to 1,316,718
SMc01769
Position (kb)
1314
1315 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1313.744 kb on - strand at 1314.349 kb on + strand at 1314.381 kb on - strand at 1314.381 kb on - strand at 1314.519 kb on + strand, within SMc01768 at 1314.519 kb on + strand, within SMc01768 at 1314.520 kb on - strand, within SMc01768 at 1314.688 kb on - strand, within SMc01768 at 1314.711 kb on + strand, within SMc01768 at 1314.961 kb on - strand at 1314.975 kb on + strand at 1314.976 kb on - strand at 1315.041 kb on + strand at 1315.090 kb on + strand at 1315.090 kb on + strand at 1315.121 kb on - strand at 1315.133 kb on - strand at 1315.140 kb on + strand at 1315.140 kb on + strand at 1315.231 kb on + strand at 1315.256 kb on - strand at 1315.318 kb on + strand at 1315.318 kb on + strand at 1315.318 kb on + strand at 1315.319 kb on - strand at 1315.319 kb on - strand at 1315.319 kb on - strand at 1315.386 kb on + strand at 1315.386 kb on + strand at 1315.386 kb on + strand at 1315.386 kb on + strand at 1315.387 kb on - strand at 1315.387 kb on - strand at 1315.387 kb on - strand at 1315.564 kb on - strand, within SMc01769 at 1315.643 kb on - strand, within SMc01769 at 1315.876 kb on + strand, within SMc01769 at 1315.876 kb on + strand, within SMc01769 at 1315.876 kb on + strand, within SMc01769 at 1315.877 kb on - strand, within SMc01769
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,313,744 - -0.0 1,314,349 + -0.8 1,314,381 - -1.0 1,314,381 - -1.6 1,314,519 + SMc01768 0.13 -2.4 1,314,519 + SMc01768 0.13 -1.7 1,314,520 - SMc01768 0.14 -4.2 1,314,688 - SMc01768 0.46 -2.0 1,314,711 + SMc01768 0.51 -0.6 1,314,961 - -0.6 1,314,975 + +1.2 1,314,976 - -0.2 1,315,041 + +0.1 1,315,090 + -0.3 1,315,090 + +0.2 1,315,121 - +0.4 1,315,133 - +0.3 1,315,140 + +0.0 1,315,140 + -0.0 1,315,231 + +0.5 1,315,256 - +0.4 1,315,318 + +0.4 1,315,318 + -0.7 1,315,318 + -0.1 1,315,319 - +0.1 1,315,319 - -0.1 1,315,319 - -0.1 1,315,386 + +0.2 1,315,386 + +0.6 1,315,386 + +0.0 1,315,386 + +0.2 1,315,387 - -0.1 1,315,387 - +0.6 1,315,387 - +0.2 1,315,564 - SMc01769 0.13 +0.3 1,315,643 - SMc01769 0.19 +1.2 1,315,876 + SMc01769 0.37 -0.2 1,315,876 + SMc01769 0.37 -0.4 1,315,876 + SMc01769 0.37 -0.3 1,315,877 - SMc01769 0.37 -0.3
Or see this region's nucleotide sequence