Strain Fitness in Sinorhizobium meliloti 1021 around SMc01768

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01766 and SMc01767 are separated by 51 nucleotidesSMc01767 and SMc01768 are separated by 130 nucleotidesSMc01768 and SMc01769 are separated by 424 nucleotides SMc01766: SMc01766 - delta-aminolevulinic acid dehydratase, at 1,312,688 to 1,313,830 SMc01766 SMc01767: SMc01767 - hypothetical protein, at 1,313,882 to 1,314,319 SMc01767 SMc01768: SMc01768 - transcriptional regulator, at 1,314,450 to 1,314,962 SMc01768 SMc01769: SMc01769 - hypothetical protein, at 1,315,387 to 1,316,718 SMc01769 Position (kb) 1314 1315Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1313.744 kb on - strandat 1314.349 kb on + strandat 1314.381 kb on - strandat 1314.381 kb on - strandat 1314.519 kb on + strand, within SMc01768at 1314.519 kb on + strand, within SMc01768at 1314.520 kb on - strand, within SMc01768at 1314.688 kb on - strand, within SMc01768at 1314.711 kb on + strand, within SMc01768at 1314.961 kb on - strandat 1314.975 kb on + strandat 1314.976 kb on - strandat 1315.041 kb on + strandat 1315.090 kb on + strandat 1315.090 kb on + strandat 1315.121 kb on - strandat 1315.133 kb on - strandat 1315.140 kb on + strandat 1315.140 kb on + strandat 1315.231 kb on + strandat 1315.256 kb on - strandat 1315.318 kb on + strandat 1315.318 kb on + strandat 1315.318 kb on + strandat 1315.319 kb on - strandat 1315.319 kb on - strandat 1315.319 kb on - strandat 1315.386 kb on + strandat 1315.386 kb on + strandat 1315.386 kb on + strandat 1315.386 kb on + strandat 1315.387 kb on - strandat 1315.387 kb on - strandat 1315.387 kb on - strandat 1315.564 kb on - strand, within SMc01769at 1315.643 kb on - strand, within SMc01769at 1315.876 kb on + strand, within SMc01769at 1315.876 kb on + strand, within SMc01769at 1315.876 kb on + strand, within SMc01769at 1315.877 kb on - strand, within SMc01769

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,313,744 - -0.0
1,314,349 + -0.8
1,314,381 - -1.0
1,314,381 - -1.6
1,314,519 + SMc01768 0.13 -2.4
1,314,519 + SMc01768 0.13 -1.7
1,314,520 - SMc01768 0.14 -4.2
1,314,688 - SMc01768 0.46 -2.0
1,314,711 + SMc01768 0.51 -0.6
1,314,961 - -0.6
1,314,975 + +1.2
1,314,976 - -0.2
1,315,041 + +0.1
1,315,090 + -0.3
1,315,090 + +0.2
1,315,121 - +0.4
1,315,133 - +0.3
1,315,140 + +0.0
1,315,140 + -0.0
1,315,231 + +0.5
1,315,256 - +0.4
1,315,318 + +0.4
1,315,318 + -0.7
1,315,318 + -0.1
1,315,319 - +0.1
1,315,319 - -0.1
1,315,319 - -0.1
1,315,386 + +0.2
1,315,386 + +0.6
1,315,386 + +0.0
1,315,386 + +0.2
1,315,387 - -0.1
1,315,387 - +0.6
1,315,387 - +0.2
1,315,564 - SMc01769 0.13 +0.3
1,315,643 - SMc01769 0.19 +1.2
1,315,876 + SMc01769 0.37 -0.2
1,315,876 + SMc01769 0.37 -0.4
1,315,876 + SMc01769 0.37 -0.3
1,315,877 - SMc01769 0.37 -0.3

Or see this region's nucleotide sequence