Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00765 and SMc00766 are separated by 348 nucleotides SMc00766 and SMc00767 are separated by 165 nucleotides SMc00767 and SMc00768 are separated by 111 nucleotides
SMc00765: SMc00765 - methyl-accepting chemotaxis protein, at 775,714 to 778,239
SMc00765
SMc00766: SMc00766 - transcriptional regulator, at 778,588 to 779,463
SMc00766
SMc00767: SMc00767 - hypothetical protein, at 779,629 to 779,868
SMc00767
SMc00768: SMc00768 - isocitrate lyase, at 779,980 to 781,269
SMc00768
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1 at 777.642 kb on + strand, within SMc00765 at 777.642 kb on + strand, within SMc00765 at 777.642 kb on + strand, within SMc00765 at 777.642 kb on + strand, within SMc00765 at 777.643 kb on - strand, within SMc00765 at 777.643 kb on - strand, within SMc00765 at 777.756 kb on + strand, within SMc00765 at 778.237 kb on + strand at 778.492 kb on + strand at 778.493 kb on - strand at 778.493 kb on - strand at 778.493 kb on - strand at 778.613 kb on - strand at 779.038 kb on + strand, within SMc00766 at 779.039 kb on - strand, within SMc00766 at 779.072 kb on - strand, within SMc00766 at 779.072 kb on - strand, within SMc00766 at 779.072 kb on - strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.143 kb on - strand, within SMc00766 at 779.144 kb on + strand, within SMc00766 at 779.144 kb on + strand, within SMc00766 at 779.388 kb on - strand at 779.388 kb on - strand at 779.419 kb on - strand at 779.603 kb on + strand at 779.623 kb on + strand at 779.623 kb on + strand at 779.860 kb on + strand at 779.861 kb on - strand at 779.861 kb on - strand at 780.117 kb on + strand, within SMc00768 at 780.118 kb on - strand, within SMc00768 at 780.164 kb on + strand, within SMc00768 at 780.216 kb on - strand, within SMc00768 at 780.260 kb on + strand, within SMc00768 at 780.261 kb on - strand, within SMc00768 at 780.346 kb on - strand, within SMc00768 at 780.346 kb on - strand, within SMc00768 at 780.348 kb on - strand, within SMc00768
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 777,642 + SMc00765 0.76 +0.0 777,642 + SMc00765 0.76 -0.6 777,642 + SMc00765 0.76 +0.1 777,642 + SMc00765 0.76 +0.3 777,643 - SMc00765 0.76 -1.0 777,643 - SMc00765 0.76 -0.2 777,756 + SMc00765 0.81 +0.0 778,237 + +0.2 778,492 + +0.2 778,493 - -0.1 778,493 - -0.3 778,493 - +0.4 778,613 - -0.4 779,038 + SMc00766 0.51 -1.4 779,039 - SMc00766 0.51 +0.5 779,072 - SMc00766 0.55 -0.3 779,072 - SMc00766 0.55 +0.3 779,072 - SMc00766 0.55 -0.2 779,142 + SMc00766 0.63 +0.7 779,142 + SMc00766 0.63 +0.5 779,142 + SMc00766 0.63 +0.9 779,142 + SMc00766 0.63 +0.6 779,143 - SMc00766 0.63 +0.4 779,144 + SMc00766 0.63 +0.8 779,144 + SMc00766 0.63 -0.2 779,388 - +0.4 779,388 - -1.5 779,419 - +0.3 779,603 + -0.2 779,623 + -0.6 779,623 + +0.3 779,860 + -1.2 779,861 - -0.1 779,861 - -0.9 780,117 + SMc00768 0.11 -0.3 780,118 - SMc00768 0.11 -2.6 780,164 + SMc00768 0.14 -0.4 780,216 - SMc00768 0.18 -1.5 780,260 + SMc00768 0.22 -0.8 780,261 - SMc00768 0.22 -0.3 780,346 - SMc00768 0.28 -1.1 780,346 - SMc00768 0.28 +0.1 780,348 - SMc00768 0.29 -0.4
Or see this region's nucleotide sequence