Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00673 and SMc00672 are separated by 37 nucleotides SMc00672 and SMc00671 are separated by 136 nucleotides SMc00671 and SMc00670 overlap by 8 nucleotides
SMc00673: SMc00673 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) , at 2,906,417 to 2,907,802
SMc00673
SMc00672: SMc00672 - histidine-binding periplasmic signal peptide protein, at 2,907,840 to 2,908,874
SMc00672
SMc00671: SMc00671 - histidine transport system permease ABC transporter protein, at 2,909,011 to 2,909,868
SMc00671
SMc00670: SMc00670 - histidine transport ATP-binding ABC transporter protein, at 2,909,861 to 2,910,688
SMc00670
Position (kb)
2907
2908
2909 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 2906.859 kb on + strand, within SMc00673 at 2906.859 kb on + strand, within SMc00673 at 2906.860 kb on - strand, within SMc00673 at 2906.860 kb on - strand, within SMc00673 at 2906.860 kb on - strand, within SMc00673 at 2906.909 kb on + strand, within SMc00673 at 2906.910 kb on - strand, within SMc00673 at 2906.910 kb on - strand, within SMc00673 at 2907.041 kb on + strand, within SMc00673 at 2907.629 kb on + strand, within SMc00673 at 2907.629 kb on + strand, within SMc00673 at 2907.629 kb on + strand, within SMc00673 at 2907.629 kb on + strand, within SMc00673 at 2907.630 kb on - strand, within SMc00673 at 2907.631 kb on + strand, within SMc00673 at 2907.632 kb on - strand, within SMc00673 at 2907.800 kb on + strand at 2907.800 kb on + strand at 2907.801 kb on - strand at 2907.801 kb on - strand at 2907.921 kb on + strand at 2908.017 kb on + strand, within SMc00672 at 2908.180 kb on + strand, within SMc00672 at 2908.181 kb on - strand, within SMc00672 at 2908.212 kb on + strand, within SMc00672 at 2908.213 kb on - strand, within SMc00672 at 2908.213 kb on - strand, within SMc00672 at 2908.402 kb on - strand, within SMc00672 at 2908.402 kb on - strand, within SMc00672 at 2908.419 kb on + strand, within SMc00672 at 2908.419 kb on + strand, within SMc00672 at 2908.419 kb on + strand, within SMc00672 at 2908.420 kb on - strand, within SMc00672 at 2908.420 kb on - strand, within SMc00672 at 2908.420 kb on - strand, within SMc00672 at 2908.504 kb on - strand, within SMc00672 at 2908.504 kb on - strand, within SMc00672 at 2908.504 kb on - strand, within SMc00672 at 2908.504 kb on - strand, within SMc00672 at 2908.504 kb on - strand, within SMc00672 at 2908.504 kb on - strand, within SMc00672 at 2908.504 kb on - strand, within SMc00672 at 2908.506 kb on + strand, within SMc00672 at 2908.506 kb on + strand, within SMc00672 at 2908.566 kb on + strand, within SMc00672 at 2908.566 kb on + strand, within SMc00672 at 2908.566 kb on + strand, within SMc00672 at 2908.567 kb on - strand, within SMc00672 at 2908.567 kb on - strand, within SMc00672 at 2908.567 kb on - strand, within SMc00672 at 2908.567 kb on - strand, within SMc00672 at 2908.568 kb on + strand, within SMc00672 at 2908.569 kb on - strand, within SMc00672 at 2908.650 kb on + strand, within SMc00672 at 2908.651 kb on - strand, within SMc00672 at 2908.749 kb on + strand, within SMc00672 at 2908.749 kb on + strand, within SMc00672 at 2908.749 kb on + strand, within SMc00672 at 2908.750 kb on - strand, within SMc00672 at 2908.750 kb on - strand, within SMc00672 at 2908.873 kb on - strand at 2908.936 kb on + strand at 2909.006 kb on - strand at 2909.083 kb on + strand at 2909.083 kb on + strand at 2909.084 kb on - strand at 2909.084 kb on - strand at 2909.253 kb on + strand, within SMc00671 at 2909.434 kb on + strand, within SMc00671 at 2909.434 kb on + strand, within SMc00671 at 2909.497 kb on - strand, within SMc00671 at 2909.497 kb on - strand, within SMc00671 at 2909.500 kb on + strand, within SMc00671 at 2909.500 kb on + strand, within SMc00671 at 2909.500 kb on + strand, within SMc00671 at 2909.501 kb on - strand, within SMc00671 at 2909.871 kb on + strand at 2909.871 kb on + strand at 2909.872 kb on - strand at 2909.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,906,859 + SMc00673 0.32 -6.4 2,906,859 + SMc00673 0.32 -5.3 2,906,860 - SMc00673 0.32 -2.1 2,906,860 - SMc00673 0.32 -5.7 2,906,860 - SMc00673 0.32 -4.5 2,906,909 + SMc00673 0.35 -1.6 2,906,910 - SMc00673 0.36 -3.8 2,906,910 - SMc00673 0.36 -2.5 2,907,041 + SMc00673 0.45 -5.9 2,907,629 + SMc00673 0.87 -1.6 2,907,629 + SMc00673 0.87 -6.8 2,907,629 + SMc00673 0.87 -2.8 2,907,629 + SMc00673 0.87 -5.2 2,907,630 - SMc00673 0.88 -5.2 2,907,631 + SMc00673 0.88 -7.1 2,907,632 - SMc00673 0.88 -4.8 2,907,800 + -0.5 2,907,800 + -0.5 2,907,801 - -2.6 2,907,801 - -0.8 2,907,921 + +1.2 2,908,017 + SMc00672 0.17 -1.2 2,908,180 + SMc00672 0.33 -1.0 2,908,181 - SMc00672 0.33 -1.3 2,908,212 + SMc00672 0.36 -2.2 2,908,213 - SMc00672 0.36 -0.7 2,908,213 - SMc00672 0.36 -1.1 2,908,402 - SMc00672 0.54 -1.3 2,908,402 - SMc00672 0.54 +0.8 2,908,419 + SMc00672 0.56 -2.8 2,908,419 + SMc00672 0.56 -0.7 2,908,419 + SMc00672 0.56 -0.8 2,908,420 - SMc00672 0.56 -1.5 2,908,420 - SMc00672 0.56 -0.9 2,908,420 - SMc00672 0.56 -1.3 2,908,504 - SMc00672 0.64 -0.9 2,908,504 - SMc00672 0.64 -0.6 2,908,504 - SMc00672 0.64 -1.4 2,908,504 - SMc00672 0.64 -3.4 2,908,504 - SMc00672 0.64 -0.6 2,908,504 - SMc00672 0.64 +0.4 2,908,504 - SMc00672 0.64 -1.5 2,908,506 + SMc00672 0.64 -0.6 2,908,506 + SMc00672 0.64 -1.2 2,908,566 + SMc00672 0.70 -2.8 2,908,566 + SMc00672 0.70 -1.4 2,908,566 + SMc00672 0.70 -1.3 2,908,567 - SMc00672 0.70 -0.8 2,908,567 - SMc00672 0.70 -2.0 2,908,567 - SMc00672 0.70 -1.8 2,908,567 - SMc00672 0.70 -1.4 2,908,568 + SMc00672 0.70 -1.5 2,908,569 - SMc00672 0.70 -0.7 2,908,650 + SMc00672 0.78 -1.1 2,908,651 - SMc00672 0.78 -0.5 2,908,749 + SMc00672 0.88 -0.8 2,908,749 + SMc00672 0.88 -0.9 2,908,749 + SMc00672 0.88 -2.6 2,908,750 - SMc00672 0.88 -0.3 2,908,750 - SMc00672 0.88 -0.5 2,908,873 - -0.4 2,908,936 + -0.7 2,909,006 - -1.1 2,909,083 + -0.1 2,909,083 + -1.0 2,909,084 - -0.9 2,909,084 - -1.5 2,909,253 + SMc00671 0.28 -1.0 2,909,434 + SMc00671 0.49 -3.7 2,909,434 + SMc00671 0.49 -1.1 2,909,497 - SMc00671 0.57 -1.1 2,909,497 - SMc00671 0.57 -1.1 2,909,500 + SMc00671 0.57 -0.4 2,909,500 + SMc00671 0.57 -0.9 2,909,500 + SMc00671 0.57 -1.1 2,909,501 - SMc00671 0.57 -1.2 2,909,871 + -0.7 2,909,871 + -1.8 2,909,872 - -0.9 2,909,872 - +0.3
Or see this region's nucleotide sequence