Strain Fitness in Sinorhizobium meliloti 1021 around SMc00672

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00673 and SMc00672 are separated by 37 nucleotidesSMc00672 and SMc00671 are separated by 136 nucleotidesSMc00671 and SMc00670 overlap by 8 nucleotides SMc00673: SMc00673 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data), at 2,906,417 to 2,907,802 SMc00673 SMc00672: SMc00672 - histidine-binding periplasmic signal peptide protein, at 2,907,840 to 2,908,874 SMc00672 SMc00671: SMc00671 - histidine transport system permease ABC transporter protein, at 2,909,011 to 2,909,868 SMc00671 SMc00670: SMc00670 - histidine transport ATP-binding ABC transporter protein, at 2,909,861 to 2,910,688 SMc00670 Position (kb) 2907 2908 2909Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2906.859 kb on + strand, within SMc00673at 2906.859 kb on + strand, within SMc00673at 2906.860 kb on - strand, within SMc00673at 2906.860 kb on - strand, within SMc00673at 2906.860 kb on - strand, within SMc00673at 2906.909 kb on + strand, within SMc00673at 2906.910 kb on - strand, within SMc00673at 2906.910 kb on - strand, within SMc00673at 2907.041 kb on + strand, within SMc00673at 2907.629 kb on + strand, within SMc00673at 2907.629 kb on + strand, within SMc00673at 2907.629 kb on + strand, within SMc00673at 2907.629 kb on + strand, within SMc00673at 2907.630 kb on - strand, within SMc00673at 2907.631 kb on + strand, within SMc00673at 2907.632 kb on - strand, within SMc00673at 2907.800 kb on + strandat 2907.800 kb on + strandat 2907.801 kb on - strandat 2907.801 kb on - strandat 2907.921 kb on + strandat 2908.017 kb on + strand, within SMc00672at 2908.180 kb on + strand, within SMc00672at 2908.181 kb on - strand, within SMc00672at 2908.212 kb on + strand, within SMc00672at 2908.213 kb on - strand, within SMc00672at 2908.213 kb on - strand, within SMc00672at 2908.402 kb on - strand, within SMc00672at 2908.402 kb on - strand, within SMc00672at 2908.419 kb on + strand, within SMc00672at 2908.419 kb on + strand, within SMc00672at 2908.419 kb on + strand, within SMc00672at 2908.420 kb on - strand, within SMc00672at 2908.420 kb on - strand, within SMc00672at 2908.420 kb on - strand, within SMc00672at 2908.504 kb on - strand, within SMc00672at 2908.504 kb on - strand, within SMc00672at 2908.504 kb on - strand, within SMc00672at 2908.504 kb on - strand, within SMc00672at 2908.504 kb on - strand, within SMc00672at 2908.504 kb on - strand, within SMc00672at 2908.504 kb on - strand, within SMc00672at 2908.506 kb on + strand, within SMc00672at 2908.506 kb on + strand, within SMc00672at 2908.566 kb on + strand, within SMc00672at 2908.566 kb on + strand, within SMc00672at 2908.566 kb on + strand, within SMc00672at 2908.567 kb on - strand, within SMc00672at 2908.567 kb on - strand, within SMc00672at 2908.567 kb on - strand, within SMc00672at 2908.567 kb on - strand, within SMc00672at 2908.568 kb on + strand, within SMc00672at 2908.569 kb on - strand, within SMc00672at 2908.650 kb on + strand, within SMc00672at 2908.651 kb on - strand, within SMc00672at 2908.749 kb on + strand, within SMc00672at 2908.749 kb on + strand, within SMc00672at 2908.749 kb on + strand, within SMc00672at 2908.750 kb on - strand, within SMc00672at 2908.750 kb on - strand, within SMc00672at 2908.873 kb on - strandat 2908.936 kb on + strandat 2909.006 kb on - strandat 2909.083 kb on + strandat 2909.083 kb on + strandat 2909.084 kb on - strandat 2909.084 kb on - strandat 2909.253 kb on + strand, within SMc00671at 2909.434 kb on + strand, within SMc00671at 2909.434 kb on + strand, within SMc00671at 2909.497 kb on - strand, within SMc00671at 2909.497 kb on - strand, within SMc00671at 2909.500 kb on + strand, within SMc00671at 2909.500 kb on + strand, within SMc00671at 2909.500 kb on + strand, within SMc00671at 2909.501 kb on - strand, within SMc00671at 2909.871 kb on + strandat 2909.871 kb on + strandat 2909.872 kb on - strandat 2909.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,906,859 + SMc00673 0.32 -6.4
2,906,859 + SMc00673 0.32 -5.3
2,906,860 - SMc00673 0.32 -2.1
2,906,860 - SMc00673 0.32 -5.7
2,906,860 - SMc00673 0.32 -4.5
2,906,909 + SMc00673 0.35 -1.6
2,906,910 - SMc00673 0.36 -3.8
2,906,910 - SMc00673 0.36 -2.5
2,907,041 + SMc00673 0.45 -5.9
2,907,629 + SMc00673 0.87 -1.6
2,907,629 + SMc00673 0.87 -6.8
2,907,629 + SMc00673 0.87 -2.8
2,907,629 + SMc00673 0.87 -5.2
2,907,630 - SMc00673 0.88 -5.2
2,907,631 + SMc00673 0.88 -7.1
2,907,632 - SMc00673 0.88 -4.8
2,907,800 + -0.5
2,907,800 + -0.5
2,907,801 - -2.6
2,907,801 - -0.8
2,907,921 + +1.2
2,908,017 + SMc00672 0.17 -1.2
2,908,180 + SMc00672 0.33 -1.0
2,908,181 - SMc00672 0.33 -1.3
2,908,212 + SMc00672 0.36 -2.2
2,908,213 - SMc00672 0.36 -0.7
2,908,213 - SMc00672 0.36 -1.1
2,908,402 - SMc00672 0.54 -1.3
2,908,402 - SMc00672 0.54 +0.8
2,908,419 + SMc00672 0.56 -2.8
2,908,419 + SMc00672 0.56 -0.7
2,908,419 + SMc00672 0.56 -0.8
2,908,420 - SMc00672 0.56 -1.5
2,908,420 - SMc00672 0.56 -0.9
2,908,420 - SMc00672 0.56 -1.3
2,908,504 - SMc00672 0.64 -0.9
2,908,504 - SMc00672 0.64 -0.6
2,908,504 - SMc00672 0.64 -1.4
2,908,504 - SMc00672 0.64 -3.4
2,908,504 - SMc00672 0.64 -0.6
2,908,504 - SMc00672 0.64 +0.4
2,908,504 - SMc00672 0.64 -1.5
2,908,506 + SMc00672 0.64 -0.6
2,908,506 + SMc00672 0.64 -1.2
2,908,566 + SMc00672 0.70 -2.8
2,908,566 + SMc00672 0.70 -1.4
2,908,566 + SMc00672 0.70 -1.3
2,908,567 - SMc00672 0.70 -0.8
2,908,567 - SMc00672 0.70 -2.0
2,908,567 - SMc00672 0.70 -1.8
2,908,567 - SMc00672 0.70 -1.4
2,908,568 + SMc00672 0.70 -1.5
2,908,569 - SMc00672 0.70 -0.7
2,908,650 + SMc00672 0.78 -1.1
2,908,651 - SMc00672 0.78 -0.5
2,908,749 + SMc00672 0.88 -0.8
2,908,749 + SMc00672 0.88 -0.9
2,908,749 + SMc00672 0.88 -2.6
2,908,750 - SMc00672 0.88 -0.3
2,908,750 - SMc00672 0.88 -0.5
2,908,873 - -0.4
2,908,936 + -0.7
2,909,006 - -1.1
2,909,083 + -0.1
2,909,083 + -1.0
2,909,084 - -0.9
2,909,084 - -1.5
2,909,253 + SMc00671 0.28 -1.0
2,909,434 + SMc00671 0.49 -3.7
2,909,434 + SMc00671 0.49 -1.1
2,909,497 - SMc00671 0.57 -1.1
2,909,497 - SMc00671 0.57 -1.1
2,909,500 + SMc00671 0.57 -0.4
2,909,500 + SMc00671 0.57 -0.9
2,909,500 + SMc00671 0.57 -1.1
2,909,501 - SMc00671 0.57 -1.2
2,909,871 + -0.7
2,909,871 + -1.8
2,909,872 - -0.9
2,909,872 - +0.3

Or see this region's nucleotide sequence