Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00672 and SMc00671 are separated by 136 nucleotides SMc00671 and SMc00670 overlap by 8 nucleotides SMc00670 and SMc00669 overlap by 8 nucleotides
SMc00672: SMc00672 - histidine-binding periplasmic signal peptide protein, at 2,907,840 to 2,908,874
SMc00672
SMc00671: SMc00671 - histidine transport system permease ABC transporter protein, at 2,909,011 to 2,909,868
SMc00671
SMc00670: SMc00670 - histidine transport ATP-binding ABC transporter protein, at 2,909,861 to 2,910,688
SMc00670
SMc00669: SMc00669 - histidine ammonia-lyase, at 2,910,681 to 2,912,180
SMc00669
Position (kb)
2909
2910
2911 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2908.873 kb on - strand at 2908.936 kb on + strand at 2909.006 kb on - strand at 2909.083 kb on + strand at 2909.083 kb on + strand at 2909.084 kb on - strand at 2909.084 kb on - strand at 2909.253 kb on + strand, within SMc00671 at 2909.434 kb on + strand, within SMc00671 at 2909.434 kb on + strand, within SMc00671 at 2909.497 kb on - strand, within SMc00671 at 2909.497 kb on - strand, within SMc00671 at 2909.500 kb on + strand, within SMc00671 at 2909.500 kb on + strand, within SMc00671 at 2909.500 kb on + strand, within SMc00671 at 2909.501 kb on - strand, within SMc00671 at 2909.871 kb on + strand at 2909.871 kb on + strand at 2909.872 kb on - strand at 2909.872 kb on - strand at 2910.130 kb on + strand, within SMc00670 at 2910.131 kb on - strand, within SMc00670 at 2910.307 kb on + strand, within SMc00670 at 2910.307 kb on + strand, within SMc00670 at 2910.307 kb on + strand, within SMc00670 at 2910.308 kb on - strand, within SMc00670 at 2910.636 kb on - strand at 2910.636 kb on - strand at 2910.636 kb on - strand at 2910.636 kb on - strand at 2910.713 kb on + strand at 2910.713 kb on + strand at 2910.837 kb on + strand, within SMc00669 at 2910.991 kb on + strand, within SMc00669 at 2910.991 kb on + strand, within SMc00669 at 2910.991 kb on + strand, within SMc00669 at 2910.992 kb on - strand, within SMc00669 at 2911.108 kb on + strand, within SMc00669 at 2911.109 kb on - strand, within SMc00669 at 2911.109 kb on - strand, within SMc00669 at 2911.234 kb on - strand, within SMc00669 at 2911.347 kb on + strand, within SMc00669 at 2911.347 kb on + strand, within SMc00669 at 2911.475 kb on + strand, within SMc00669 at 2911.476 kb on - strand, within SMc00669
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,908,873 - -0.4 2,908,936 + -0.7 2,909,006 - -1.1 2,909,083 + -0.1 2,909,083 + -1.0 2,909,084 - -0.9 2,909,084 - -1.5 2,909,253 + SMc00671 0.28 -1.0 2,909,434 + SMc00671 0.49 -3.7 2,909,434 + SMc00671 0.49 -1.1 2,909,497 - SMc00671 0.57 -1.1 2,909,497 - SMc00671 0.57 -1.1 2,909,500 + SMc00671 0.57 -0.4 2,909,500 + SMc00671 0.57 -0.9 2,909,500 + SMc00671 0.57 -1.1 2,909,501 - SMc00671 0.57 -1.2 2,909,871 + -0.7 2,909,871 + -1.8 2,909,872 - -0.9 2,909,872 - +0.3 2,910,130 + SMc00670 0.32 -1.0 2,910,131 - SMc00670 0.33 -1.3 2,910,307 + SMc00670 0.54 -0.6 2,910,307 + SMc00670 0.54 -1.3 2,910,307 + SMc00670 0.54 -1.3 2,910,308 - SMc00670 0.54 -0.9 2,910,636 - +1.1 2,910,636 - +0.8 2,910,636 - -2.2 2,910,636 - -3.5 2,910,713 + +0.0 2,910,713 + -0.9 2,910,837 + SMc00669 0.10 -0.5 2,910,991 + SMc00669 0.21 -0.8 2,910,991 + SMc00669 0.21 +0.4 2,910,991 + SMc00669 0.21 -0.5 2,910,992 - SMc00669 0.21 -0.0 2,911,108 + SMc00669 0.28 -1.0 2,911,109 - SMc00669 0.29 +0.0 2,911,109 - SMc00669 0.29 +0.0 2,911,234 - SMc00669 0.37 -0.1 2,911,347 + SMc00669 0.44 +0.6 2,911,347 + SMc00669 0.44 +1.5 2,911,475 + SMc00669 0.53 +0.0 2,911,476 - SMc00669 0.53 +0.5
Or see this region's nucleotide sequence