Strain Fitness in Sinorhizobium meliloti 1021 around SMc00670

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00672 and SMc00671 are separated by 136 nucleotidesSMc00671 and SMc00670 overlap by 8 nucleotidesSMc00670 and SMc00669 overlap by 8 nucleotides SMc00672: SMc00672 - histidine-binding periplasmic signal peptide protein, at 2,907,840 to 2,908,874 SMc00672 SMc00671: SMc00671 - histidine transport system permease ABC transporter protein, at 2,909,011 to 2,909,868 SMc00671 SMc00670: SMc00670 - histidine transport ATP-binding ABC transporter protein, at 2,909,861 to 2,910,688 SMc00670 SMc00669: SMc00669 - histidine ammonia-lyase, at 2,910,681 to 2,912,180 SMc00669 Position (kb) 2909 2910 2911Strain fitness (log2 ratio) -3 -2 -1 0 1at 2908.873 kb on - strandat 2908.936 kb on + strandat 2909.006 kb on - strandat 2909.083 kb on + strandat 2909.083 kb on + strandat 2909.084 kb on - strandat 2909.084 kb on - strandat 2909.253 kb on + strand, within SMc00671at 2909.434 kb on + strand, within SMc00671at 2909.434 kb on + strand, within SMc00671at 2909.497 kb on - strand, within SMc00671at 2909.497 kb on - strand, within SMc00671at 2909.500 kb on + strand, within SMc00671at 2909.500 kb on + strand, within SMc00671at 2909.500 kb on + strand, within SMc00671at 2909.501 kb on - strand, within SMc00671at 2909.871 kb on + strandat 2909.871 kb on + strandat 2909.872 kb on - strandat 2909.872 kb on - strandat 2910.130 kb on + strand, within SMc00670at 2910.131 kb on - strand, within SMc00670at 2910.307 kb on + strand, within SMc00670at 2910.307 kb on + strand, within SMc00670at 2910.307 kb on + strand, within SMc00670at 2910.308 kb on - strand, within SMc00670at 2910.636 kb on - strandat 2910.636 kb on - strandat 2910.636 kb on - strandat 2910.636 kb on - strandat 2910.713 kb on + strandat 2910.713 kb on + strandat 2910.837 kb on + strand, within SMc00669at 2910.991 kb on + strand, within SMc00669at 2910.991 kb on + strand, within SMc00669at 2910.991 kb on + strand, within SMc00669at 2910.992 kb on - strand, within SMc00669at 2911.108 kb on + strand, within SMc00669at 2911.109 kb on - strand, within SMc00669at 2911.109 kb on - strand, within SMc00669at 2911.234 kb on - strand, within SMc00669at 2911.347 kb on + strand, within SMc00669at 2911.347 kb on + strand, within SMc00669at 2911.475 kb on + strand, within SMc00669at 2911.476 kb on - strand, within SMc00669

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,908,873 - -0.4
2,908,936 + -0.7
2,909,006 - -1.1
2,909,083 + -0.1
2,909,083 + -1.0
2,909,084 - -0.9
2,909,084 - -1.5
2,909,253 + SMc00671 0.28 -1.0
2,909,434 + SMc00671 0.49 -3.7
2,909,434 + SMc00671 0.49 -1.1
2,909,497 - SMc00671 0.57 -1.1
2,909,497 - SMc00671 0.57 -1.1
2,909,500 + SMc00671 0.57 -0.4
2,909,500 + SMc00671 0.57 -0.9
2,909,500 + SMc00671 0.57 -1.1
2,909,501 - SMc00671 0.57 -1.2
2,909,871 + -0.7
2,909,871 + -1.8
2,909,872 - -0.9
2,909,872 - +0.3
2,910,130 + SMc00670 0.32 -1.0
2,910,131 - SMc00670 0.33 -1.3
2,910,307 + SMc00670 0.54 -0.6
2,910,307 + SMc00670 0.54 -1.3
2,910,307 + SMc00670 0.54 -1.3
2,910,308 - SMc00670 0.54 -0.9
2,910,636 - +1.1
2,910,636 - +0.8
2,910,636 - -2.2
2,910,636 - -3.5
2,910,713 + +0.0
2,910,713 + -0.9
2,910,837 + SMc00669 0.10 -0.5
2,910,991 + SMc00669 0.21 -0.8
2,910,991 + SMc00669 0.21 +0.4
2,910,991 + SMc00669 0.21 -0.5
2,910,992 - SMc00669 0.21 -0.0
2,911,108 + SMc00669 0.28 -1.0
2,911,109 - SMc00669 0.29 +0.0
2,911,109 - SMc00669 0.29 +0.0
2,911,234 - SMc00669 0.37 -0.1
2,911,347 + SMc00669 0.44 +0.6
2,911,347 + SMc00669 0.44 +1.5
2,911,475 + SMc00669 0.53 +0.0
2,911,476 - SMc00669 0.53 +0.5

Or see this region's nucleotide sequence