Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00189 and SMc00188 are separated by 32 nucleotides SMc00188 and SMc00187 are separated by 14 nucleotides SMc00187 and SMc00186 are separated by 314 nucleotides
SMc00189: SMc00189 - cytochrome C1 protein, at 1,972,800 to 1,973,675
SMc00189
SMc00188: SMc00188 - cytochrome B transmembrane protein, at 1,973,708 to 1,974,988
SMc00188
SMc00187: SMc00187 - ubiquinol-cytochrome C reductase iron-sulfur subunit protein, at 1,975,003 to 1,975,581
SMc00187
SMc00186: SMc00186 - ABC transporter ATP-binding protein, at 1,975,896 to 1,977,818
SMc00186
Position (kb) 1973
1974
1975 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1972.753 kb on - strand at 1972.840 kb on + strand at 1972.840 kb on + strand at 1972.841 kb on - strand at 1972.954 kb on + strand, within SMc00189 at 1972.988 kb on - strand, within SMc00189 at 1972.988 kb on - strand, within SMc00189 at 1973.354 kb on - strand, within SMc00189 at 1973.459 kb on - strand, within SMc00189 at 1973.660 kb on + strand at 1973.660 kb on + strand at 1973.874 kb on + strand, within SMc00188 at 1973.875 kb on - strand, within SMc00188 at 1973.953 kb on - strand, within SMc00188 at 1973.953 kb on - strand, within SMc00188 at 1973.990 kb on - strand, within SMc00188 at 1974.117 kb on + strand, within SMc00188 at 1974.117 kb on + strand, within SMc00188 at 1974.169 kb on - strand, within SMc00188 at 1974.169 kb on - strand, within SMc00188 at 1974.202 kb on - strand, within SMc00188 at 1974.549 kb on + strand, within SMc00188 at 1974.549 kb on + strand, within SMc00188 at 1974.582 kb on + strand, within SMc00188 at 1974.583 kb on - strand, within SMc00188 at 1974.627 kb on + strand, within SMc00188 at 1974.637 kb on - strand, within SMc00188 at 1974.640 kb on - strand, within SMc00188 at 1974.663 kb on + strand, within SMc00188 at 1974.783 kb on + strand, within SMc00188 at 1974.783 kb on + strand, within SMc00188 at 1974.784 kb on - strand, within SMc00188 at 1974.855 kb on + strand, within SMc00188 at 1974.855 kb on + strand, within SMc00188 at 1974.855 kb on + strand, within SMc00188 at 1974.856 kb on - strand, within SMc00188 at 1974.856 kb on - strand, within SMc00188 at 1974.856 kb on - strand, within SMc00188 at 1974.861 kb on + strand at 1974.862 kb on - strand at 1974.967 kb on - strand at 1974.989 kb on + strand at 1975.101 kb on - strand, within SMc00187 at 1975.101 kb on - strand, within SMc00187 at 1975.520 kb on + strand, within SMc00187 at 1975.521 kb on - strand, within SMc00187 at 1975.778 kb on - strand at 1975.795 kb on - strand at 1975.795 kb on - strand at 1975.957 kb on + strand at 1975.957 kb on + strand at 1975.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,972,753 - -0.3 1,972,840 + -0.3 1,972,840 + +0.3 1,972,841 - +0.0 1,972,954 + SMc00189 0.18 -1.7 1,972,988 - SMc00189 0.21 -2.4 1,972,988 - SMc00189 0.21 -2.0 1,973,354 - SMc00189 0.63 -2.3 1,973,459 - SMc00189 0.75 -0.5 1,973,660 + -1.8 1,973,660 + -2.0 1,973,874 + SMc00188 0.13 -0.2 1,973,875 - SMc00188 0.13 -1.0 1,973,953 - SMc00188 0.19 -1.8 1,973,953 - SMc00188 0.19 +0.3 1,973,990 - SMc00188 0.22 -1.2 1,974,117 + SMc00188 0.32 -1.5 1,974,117 + SMc00188 0.32 -2.9 1,974,169 - SMc00188 0.36 -1.4 1,974,169 - SMc00188 0.36 -1.4 1,974,202 - SMc00188 0.39 -1.0 1,974,549 + SMc00188 0.66 -1.4 1,974,549 + SMc00188 0.66 -2.3 1,974,582 + SMc00188 0.68 +0.3 1,974,583 - SMc00188 0.68 -1.8 1,974,627 + SMc00188 0.72 -1.4 1,974,637 - SMc00188 0.73 -2.0 1,974,640 - SMc00188 0.73 -2.0 1,974,663 + SMc00188 0.75 -0.2 1,974,783 + SMc00188 0.84 -1.0 1,974,783 + SMc00188 0.84 +3.2 1,974,784 - SMc00188 0.84 -2.7 1,974,855 + SMc00188 0.90 -0.6 1,974,855 + SMc00188 0.90 -1.7 1,974,855 + SMc00188 0.90 -3.6 1,974,856 - SMc00188 0.90 -0.9 1,974,856 - SMc00188 0.90 -0.9 1,974,856 - SMc00188 0.90 -0.4 1,974,861 + -0.8 1,974,862 - -0.9 1,974,967 - +0.2 1,974,989 + -0.6 1,975,101 - SMc00187 0.17 +0.5 1,975,101 - SMc00187 0.17 +1.7 1,975,520 + SMc00187 0.89 -1.1 1,975,521 - SMc00187 0.89 -1.2 1,975,778 - -0.1 1,975,795 - +0.1 1,975,795 - +0.3 1,975,957 + -0.7 1,975,957 + +0.3 1,975,958 - -0.0
Or see this region's nucleotide sequence