Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1740 and SMa1741 overlap by 4 nucleotides SMa1741 and SMa1742 overlap by 1 nucleotides SMa1742 and SMa1745 overlap by 4 nucleotides
SMa1740: SMa1740 - Siderophore-interacting protein, at 983,996 to 985,066
SMa1740
SMa1741: SMa1741 - ABC transporter ATP-binding protein, at 985,063 to 985,905
SMa1741
SMa1742: SMa1742 - Fe3+-siderophore ABC transporter permease, at 985,905 to 986,942
SMa1742
SMa1745: SMa1745 - ABC transporter permease, Fe3+-siderophore transport system, at 986,939 to 988,039
SMa1745
Position (kb) 985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 984.923 kb on + strand, within SMa1740 at 984.924 kb on - strand, within SMa1740 at 985.019 kb on - strand at 985.136 kb on - strand at 985.327 kb on - strand, within SMa1741 at 985.942 kb on + strand at 985.943 kb on - strand at 985.943 kb on - strand at 985.944 kb on + strand at 985.951 kb on + strand at 985.951 kb on + strand at 985.983 kb on + strand at 985.984 kb on - strand at 986.201 kb on + strand, within SMa1742 at 986.201 kb on + strand, within SMa1742 at 986.251 kb on - strand, within SMa1742 at 986.410 kb on + strand, within SMa1742 at 986.530 kb on - strand at 986.574 kb on + strand, within SMa1742 at 986.574 kb on + strand, within SMa1742 at 986.574 kb on + strand, within SMa1742 at 986.574 kb on + strand, within SMa1742 at 986.575 kb on - strand, within SMa1742 at 986.575 kb on - strand, within SMa1742 at 986.649 kb on + strand, within SMa1742 at 986.689 kb on - strand, within SMa1742 at 986.776 kb on - strand, within SMa1742 at 986.776 kb on - strand, within SMa1742 at 987.014 kb on + strand at 987.015 kb on - strand at 987.015 kb on - strand at 987.015 kb on - strand at 987.150 kb on - strand, within SMa1745 at 987.332 kb on + strand, within SMa1745 at 987.333 kb on - strand, within SMa1745 at 987.409 kb on + strand, within SMa1745 at 987.588 kb on + strand, within SMa1745 at 987.589 kb on - strand, within SMa1745 at 987.589 kb on - strand, within SMa1745 at 987.589 kb on - strand, within SMa1745 at 987.596 kb on + strand, within SMa1745 at 987.597 kb on - strand, within SMa1745 at 987.796 kb on + strand, within SMa1745
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 984,923 + SMa1740 0.87 -0.5 984,924 - SMa1740 0.87 +0.1 985,019 - +0.3 985,136 - -1.0 985,327 - SMa1741 0.31 -0.8 985,942 + +0.5 985,943 - +0.1 985,943 - +0.5 985,944 + -0.2 985,951 + +0.2 985,951 + -1.1 985,983 + +0.3 985,984 - +0.3 986,201 + SMa1742 0.29 -0.5 986,201 + SMa1742 0.29 -0.4 986,251 - SMa1742 0.33 -1.0 986,410 + SMa1742 0.49 -0.3 986,530 - +3.5 986,574 + SMa1742 0.64 +1.9 986,574 + SMa1742 0.64 +0.2 986,574 + SMa1742 0.64 -0.3 986,574 + SMa1742 0.64 +0.4 986,575 - SMa1742 0.65 -1.2 986,575 - SMa1742 0.65 -0.5 986,649 + SMa1742 0.72 +0.0 986,689 - SMa1742 0.76 -2.5 986,776 - SMa1742 0.84 -0.9 986,776 - SMa1742 0.84 -0.8 987,014 + +0.6 987,015 - -0.1 987,015 - +0.2 987,015 - -0.5 987,150 - SMa1745 0.19 +0.5 987,332 + SMa1745 0.36 +0.0 987,333 - SMa1745 0.36 -0.1 987,409 + SMa1745 0.43 -0.2 987,588 + SMa1745 0.59 +0.4 987,589 - SMa1745 0.59 -0.1 987,589 - SMa1745 0.59 -0.0 987,589 - SMa1745 0.59 +0.6 987,596 + SMa1745 0.60 -0.1 987,597 - SMa1745 0.60 -0.4 987,796 + SMa1745 0.78 -0.8
Or see this region's nucleotide sequence